Sophie

Sophie

distrib > Mageia > 1 > i586 > by-pkgid > 1617cdd36904da561c923739fe944ee9 > files

python-biopython-1.56-1.mga1.i586.rpm

Files

drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio
-rw-r--r-- 326 root root /usr/lib/python2.7/site-packages/biopython-1.56-py2.7.egg-info
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Affy
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Align
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/AlignIO
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Alphabet
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Application
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Blast
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/CAPS
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Clustalw
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Cluster
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Compass
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Crystal
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Data
-rw-r--r-- 5991 root root /usr/lib/python2.7/site-packages/Bio/DocSQL.py
-rw-r--r-- 8679 root root /usr/lib/python2.7/site-packages/Bio/DocSQL.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Emboss
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Encodings
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Entrez
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Enzyme
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/ExPASy
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/FSSP
-rw-r--r-- 4640 root root /usr/lib/python2.7/site-packages/Bio/File.py
-rw-r--r-- 5750 root root /usr/lib/python2.7/site-packages/Bio/File.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/GA
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/GFF
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/GenBank
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Geo
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Graphics
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/HMM
-rw-r--r-- 2049 root root /usr/lib/python2.7/site-packages/Bio/HotRand.py
-rw-r--r-- 2779 root root /usr/lib/python2.7/site-packages/Bio/HotRand.pyc
-rw-r--r-- 4883 root root /usr/lib/python2.7/site-packages/Bio/Index.py
-rw-r--r-- 4696 root root /usr/lib/python2.7/site-packages/Bio/Index.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/InterPro
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/KDTree
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/KEGG
-rw-r--r-- 4447 root root /usr/lib/python2.7/site-packages/Bio/LogisticRegression.py
-rw-r--r-- 4058 root root /usr/lib/python2.7/site-packages/Bio/LogisticRegression.pyc
-rw-r--r-- 22440 root root /usr/lib/python2.7/site-packages/Bio/MarkovModel.py
-rw-r--r-- 16989 root root /usr/lib/python2.7/site-packages/Bio/MarkovModel.pyc
-rw-r--r-- 10891 root root /usr/lib/python2.7/site-packages/Bio/MaxEntropy.py
-rw-r--r-- 9952 root root /usr/lib/python2.7/site-packages/Bio/MaxEntropy.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Medline
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Motif
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/NMR
-rw-r--r-- 8639 root root /usr/lib/python2.7/site-packages/Bio/NaiveBayes.py
-rw-r--r-- 6267 root root /usr/lib/python2.7/site-packages/Bio/NaiveBayes.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Nexus
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PDB
-rw-r--r-- 15512 root root /usr/lib/python2.7/site-packages/Bio/ParserSupport.py
-rw-r--r-- 16228 root root /usr/lib/python2.7/site-packages/Bio/ParserSupport.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Parsers
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Pathway
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Phylo
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PopGen
-rw-r--r-- 2895 root root /usr/lib/python2.7/site-packages/Bio/PropertyManager.py
-rw-r--r-- 2327 root root /usr/lib/python2.7/site-packages/Bio/PropertyManager.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Prosite
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Restriction
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/SCOP
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/SVDSuperimposer
-rw-r--r-- 5580 root root /usr/lib/python2.7/site-packages/Bio/Search.py
-rw-r--r-- 5673 root root /usr/lib/python2.7/site-packages/Bio/Search.pyc
-rw-r--r-- 84964 root root /usr/lib/python2.7/site-packages/Bio/Seq.py
-rw-r--r-- 76512 root root /usr/lib/python2.7/site-packages/Bio/Seq.pyc
-rw-r--r-- 36464 root root /usr/lib/python2.7/site-packages/Bio/SeqFeature.py
-rw-r--r-- 39606 root root /usr/lib/python2.7/site-packages/Bio/SeqFeature.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/SeqIO
-rw-r--r-- 39372 root root /usr/lib/python2.7/site-packages/Bio/SeqRecord.py
-rw-r--r-- 35196 root root /usr/lib/python2.7/site-packages/Bio/SeqRecord.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Sequencing
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Statistics
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/SubsMat
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/SwissProt
-rw-r--r-- 1826 root root /usr/lib/python2.7/site-packages/Bio/Transcribe.py
-rw-r--r-- 2375 root root /usr/lib/python2.7/site-packages/Bio/Transcribe.pyc
-rw-r--r-- 5689 root root /usr/lib/python2.7/site-packages/Bio/Translate.py
-rw-r--r-- 5208 root root /usr/lib/python2.7/site-packages/Bio/Translate.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/UniGene
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Wise
-rw-r--r-- 1620 root root /usr/lib/python2.7/site-packages/Bio/__init__.py
-rw-r--r-- 2026 root root /usr/lib/python2.7/site-packages/Bio/__init__.pyc
-rw-r--r-- 2123 root root /usr/lib/python2.7/site-packages/Bio/_py3k.py
-rw-r--r-- 2477 root root /usr/lib/python2.7/site-packages/Bio/_py3k.pyc
-rwxr-xr-x 13792 root root /usr/lib/python2.7/site-packages/Bio/cpairwise2.so
-rw-r--r-- 4183 root root /usr/lib/python2.7/site-packages/Bio/kNN.py
-rw-r--r-- 4417 root root /usr/lib/python2.7/site-packages/Bio/kNN.pyc
-rw-r--r-- 4751 root root /usr/lib/python2.7/site-packages/Bio/listfns.py
-rw-r--r-- 5643 root root /usr/lib/python2.7/site-packages/Bio/listfns.pyc
-rw-r--r-- 33467 root root /usr/lib/python2.7/site-packages/Bio/pairwise2.py
-rw-r--r-- 21409 root root /usr/lib/python2.7/site-packages/Bio/pairwise2.pyc
-rwxr-xr-x 23244 root root /usr/lib/python2.7/site-packages/Bio/trie.so
-rw-r--r-- 2714 root root /usr/lib/python2.7/site-packages/Bio/triefind.py
-rw-r--r-- 2938 root root /usr/lib/python2.7/site-packages/Bio/triefind.pyc
-rw-r--r-- 3340 root root /usr/lib/python2.7/site-packages/Bio/utils.py
-rw-r--r-- 3857 root root /usr/lib/python2.7/site-packages/Bio/utils.pyc
-rw-r--r-- 8692 root root /usr/lib/python2.7/site-packages/Bio/Affy/CelFile.py
-rw-r--r-- 10423 root root /usr/lib/python2.7/site-packages/Bio/Affy/CelFile.pyc
-rw-r--r-- 60 root root /usr/lib/python2.7/site-packages/Bio/Affy/__init__.py
-rw-r--r-- 216 root root /usr/lib/python2.7/site-packages/Bio/Affy/__init__.pyc
-rw-r--r-- 30327 root root /usr/lib/python2.7/site-packages/Bio/Align/AlignInfo.py
-rw-r--r-- 22206 root root /usr/lib/python2.7/site-packages/Bio/Align/AlignInfo.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications
-rw-r--r-- 17086 root root /usr/lib/python2.7/site-packages/Bio/Align/Generic.py
-rw-r--r-- 16416 root root /usr/lib/python2.7/site-packages/Bio/Align/Generic.pyc
-rw-r--r-- 25300 root root /usr/lib/python2.7/site-packages/Bio/Align/__init__.py
-rw-r--r-- 24187 root root /usr/lib/python2.7/site-packages/Bio/Align/__init__.pyc
-rw-r--r-- 20457 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Clustalw.py
-rw-r--r-- 19874 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Clustalw.pyc
-rw-r--r-- 9489 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Dialign.py
-rw-r--r-- 8275 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Dialign.pyc
-rw-r--r-- 16403 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Mafft.py
-rw-r--r-- 9596 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Mafft.pyc
-rw-r--r-- 28796 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Muscle.py
-rw-r--r-- 13089 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Muscle.pyc
-rw-r--r-- 9962 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Prank.py
-rw-r--r-- 8373 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Prank.pyc
-rw-r--r-- 3747 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Probcons.py
-rw-r--r-- 3601 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_Probcons.pyc
-rw-r--r-- 3707 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_TCoffee.py
-rw-r--r-- 3388 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/_TCoffee.pyc
-rw-r--r-- 555 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/__init__.py
-rw-r--r-- 661 root root /usr/lib/python2.7/site-packages/Bio/Align/Applications/__init__.pyc
-rw-r--r-- 21480 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/ClustalIO.py
-rw-r--r-- 15899 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/ClustalIO.pyc
-rw-r--r-- 23374 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/EmbossIO.py
-rw-r--r-- 20086 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/EmbossIO.pyc
-rw-r--r-- 28972 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/FastaIO.py
-rw-r--r-- 18513 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/FastaIO.pyc
-rw-r--r-- 5733 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/Interfaces.py
-rw-r--r-- 6147 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/Interfaces.pyc
-rw-r--r-- 7161 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/NexusIO.py
-rw-r--r-- 6558 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/NexusIO.pyc
-rw-r--r-- 16183 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/PhylipIO.py
-rw-r--r-- 13055 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/PhylipIO.pyc
-rw-r--r-- 24168 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/StockholmIO.py
-rw-r--r-- 17364 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/StockholmIO.pyc
-rw-r--r-- 20815 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/__init__.py
-rw-r--r-- 17316 root root /usr/lib/python2.7/site-packages/Bio/AlignIO/__init__.pyc
-rw-r--r-- 4629 root root /usr/lib/python2.7/site-packages/Bio/Alphabet/IUPAC.py
-rw-r--r-- 4157 root root /usr/lib/python2.7/site-packages/Bio/Alphabet/IUPAC.pyc
-rw-r--r-- 4469 root root /usr/lib/python2.7/site-packages/Bio/Alphabet/Reduced.py
-rw-r--r-- 3943 root root /usr/lib/python2.7/site-packages/Bio/Alphabet/Reduced.pyc
-rw-r--r-- 14087 root root /usr/lib/python2.7/site-packages/Bio/Alphabet/__init__.py
-rw-r--r-- 15217 root root /usr/lib/python2.7/site-packages/Bio/Alphabet/__init__.pyc
-rw-r--r-- 30273 root root /usr/lib/python2.7/site-packages/Bio/Application/__init__.py
-rw-r--r-- 28315 root root /usr/lib/python2.7/site-packages/Bio/Application/__init__.pyc
-rw-r--r-- 56839 root root /usr/lib/python2.7/site-packages/Bio/Blast/Applications.py
-rw-r--r-- 51601 root root /usr/lib/python2.7/site-packages/Bio/Blast/Applications.pyc
-rw-r--r-- 90826 root root /usr/lib/python2.7/site-packages/Bio/Blast/NCBIStandalone.py
-rw-r--r-- 69514 root root /usr/lib/python2.7/site-packages/Bio/Blast/NCBIStandalone.pyc
-rw-r--r-- 9788 root root /usr/lib/python2.7/site-packages/Bio/Blast/NCBIWWW.py
-rw-r--r-- 7056 root root /usr/lib/python2.7/site-packages/Bio/Blast/NCBIWWW.pyc
-rw-r--r-- 24483 root root /usr/lib/python2.7/site-packages/Bio/Blast/NCBIXML.py
-rw-r--r-- 24021 root root /usr/lib/python2.7/site-packages/Bio/Blast/NCBIXML.pyc
-rw-r--r-- 3364 root root /usr/lib/python2.7/site-packages/Bio/Blast/ParseBlastTable.py
-rw-r--r-- 4991 root root /usr/lib/python2.7/site-packages/Bio/Blast/ParseBlastTable.pyc
-rw-r--r-- 14257 root root /usr/lib/python2.7/site-packages/Bio/Blast/Record.py
-rw-r--r-- 16162 root root /usr/lib/python2.7/site-packages/Bio/Blast/Record.pyc
-rw-r--r-- 281 root root /usr/lib/python2.7/site-packages/Bio/Blast/__init__.py
-rw-r--r-- 213 root root /usr/lib/python2.7/site-packages/Bio/Blast/__init__.pyc
-rw-r--r-- 3717 root root /usr/lib/python2.7/site-packages/Bio/CAPS/__init__.py
-rw-r--r-- 3897 root root /usr/lib/python2.7/site-packages/Bio/CAPS/__init__.pyc
-rw-r--r-- 21060 root root /usr/lib/python2.7/site-packages/Bio/Clustalw/__init__.py
-rw-r--r-- 16595 root root /usr/lib/python2.7/site-packages/Bio/Clustalw/__init__.pyc
-rw-r--r-- 25090 root root /usr/lib/python2.7/site-packages/Bio/Cluster/__init__.py
-rw-r--r-- 21588 root root /usr/lib/python2.7/site-packages/Bio/Cluster/__init__.pyc
-rwxr-xr-x110324 root root /usr/lib/python2.7/site-packages/Bio/Cluster/cluster.so
-rw-r--r-- 14941 root root /usr/lib/python2.7/site-packages/Bio/Compass/__init__.py
-rw-r--r-- 17766 root root /usr/lib/python2.7/site-packages/Bio/Compass/__init__.pyc
-rw-r--r-- 8361 root root /usr/lib/python2.7/site-packages/Bio/Crystal/__init__.py
-rw-r--r-- 13215 root root /usr/lib/python2.7/site-packages/Bio/Crystal/__init__.pyc
-rw-r--r-- 40787 root root /usr/lib/python2.7/site-packages/Bio/Data/CodonTable.py
-rw-r--r-- 23502 root root /usr/lib/python2.7/site-packages/Bio/Data/CodonTable.pyc
-rw-r--r-- 4538 root root /usr/lib/python2.7/site-packages/Bio/Data/IUPACData.py
-rw-r--r-- 3584 root root /usr/lib/python2.7/site-packages/Bio/Data/IUPACData.pyc
-rw-r--r-- 88 root root /usr/lib/python2.7/site-packages/Bio/Data/__init__.py
-rw-r--r-- 218 root root /usr/lib/python2.7/site-packages/Bio/Data/__init__.pyc
-rw-r--r-- 61423 root root /usr/lib/python2.7/site-packages/Bio/Emboss/Applications.py
-rw-r--r-- 59361 root root /usr/lib/python2.7/site-packages/Bio/Emboss/Applications.pyc
-rw-r--r-- 4728 root root /usr/lib/python2.7/site-packages/Bio/Emboss/Primer3.py
-rw-r--r-- 4558 root root /usr/lib/python2.7/site-packages/Bio/Emboss/Primer3.pyc
-rw-r--r-- 2142 root root /usr/lib/python2.7/site-packages/Bio/Emboss/PrimerSearch.py
-rw-r--r-- 3256 root root /usr/lib/python2.7/site-packages/Bio/Emboss/PrimerSearch.pyc
-rw-r--r-- 65 root root /usr/lib/python2.7/site-packages/Bio/Emboss/__init__.py
-rw-r--r-- 223 root root /usr/lib/python2.7/site-packages/Bio/Emboss/__init__.pyc
-rw-r--r-- 5460 root root /usr/lib/python2.7/site-packages/Bio/Encodings/IUPACEncoding.py
-rw-r--r-- 3566 root root /usr/lib/python2.7/site-packages/Bio/Encodings/IUPACEncoding.pyc
-rw-r--r-- 339 root root /usr/lib/python2.7/site-packages/Bio/Encodings/__init__.py
-rw-r--r-- 403 root root /usr/lib/python2.7/site-packages/Bio/Encodings/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs
-rw-r--r-- 20827 root root /usr/lib/python2.7/site-packages/Bio/Entrez/Parser.py
-rw-r--r-- 16479 root root /usr/lib/python2.7/site-packages/Bio/Entrez/Parser.pyc
-rw-r--r-- 13816 root root /usr/lib/python2.7/site-packages/Bio/Entrez/__init__.py
-rw-r--r-- 14384 root root /usr/lib/python2.7/site-packages/Bio/Entrez/__init__.pyc
-rw-r--r-- 2871 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/EMBL_General.mod.dtd
-rw-r--r-- 1743 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/GenBank_General.mod.dtd
-rw-r--r-- 3372 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/HomoloGene.dtd
-rw-r--r-- 6460 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/HomoloGene.mod.dtd
-rw-r--r-- 15900 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd
-rw-r--r-- 3909 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd
-rw-r--r-- 692 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd
-rw-r--r-- 6575 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd
-rw-r--r-- 410 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd
-rw-r--r-- 3397 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd
-rw-r--r-- 9857 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd
-rw-r--r-- 659 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.dtd
-rw-r--r-- 9195 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd
-rw-r--r-- 1794 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd
-rw-r--r-- 8213 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_General.mod.dtd
-rw-r--r-- 5757 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd
-rw-r--r-- 647 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Mim.dtd
-rw-r--r-- 8395 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd
-rw-r--r-- 5155 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd
-rw-r--r-- 1791 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd
-rw-r--r-- 2700 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd
-rw-r--r-- 2303 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd
-rw-r--r-- 1044 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd
-rw-r--r-- 9909 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd
-rw-r--r-- 14769 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd
-rw-r--r-- 11452 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd
-rw-r--r-- 7180 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd
-rw-r--r-- 3149 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd
-rw-r--r-- 3373 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.dtd
-rw-r--r-- 3093 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd
-rw-r--r-- 24687 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd
-rw-r--r-- 656 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.dtd
-rw-r--r-- 1660 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd
-rw-r--r-- 4632 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd
-rw-r--r-- 1815 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/PDB_General.mod.dtd
-rw-r--r-- 2076 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/PIR_General.mod.dtd
-rw-r--r-- 1535 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/PRF_General.mod.dtd
-rw-r--r-- 2375 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/SP_General.mod.dtd
-rw-r--r-- 17020 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/XHTMLtablesetup.ent
-rw-r--r-- 50346 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/archivearticle.dtd
-rw-r--r-- 8147 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/archivecustom-classes.ent
-rw-r--r-- 16340 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/archivecustom-mixes.ent
-rw-r--r-- 38165 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/archivecustom-models.ent
-rw-r--r-- 6296 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/archivecustom-modules.ent
-rw-r--r-- 96193 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/articlemeta.ent
-rw-r--r-- 14813 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/backmatter.ent
-rw-r--r-- 2645 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/bookdoc_100301.dtd
-rw-r--r-- 21053 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/chars.ent
-rw-r--r--149598 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/common.ent
-rw-r--r-- 32478 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/default-classes.ent
-rw-r--r-- 19045 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/default-mixes.ent
-rw-r--r-- 80600 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/display.ent
-rw-r--r-- 1377 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/eInfo_020511.dtd
-rw-r--r-- 1947 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/eLink_020511.dtd
-rw-r--r-- 2299 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/eLink_090910.dtd
-rw-r--r-- 522 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/ePost_020511.dtd
-rw-r--r-- 2397 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/eSearch_020511.dtd
-rw-r--r-- 736 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/eSpell.dtd
-rw-r--r-- 604 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/eSummary_041029.dtd
-rw-r--r-- 855 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/egquery.dtd
-rw-r--r-- 466 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/elink_020122.dtd
-rw-r--r-- 22334 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/format.ent
-rw-r--r-- 9515 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/htmltable.dtd
-rw-r--r-- 11698 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isoamsa.ent
-rw-r--r-- 9543 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isoamsb.ent
-rw-r--r-- 2469 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isoamsc.ent
-rw-r--r-- 7903 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isoamsn.ent
-rw-r--r-- 4519 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isoamso.ent
-rw-r--r-- 13941 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isoamsr.ent
-rw-r--r-- 3704 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isobox.ent
-rw-r--r-- 5427 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isocyr1.ent
-rw-r--r-- 2668 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isocyr2.ent
-rw-r--r-- 1696 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isodia.ent
-rw-r--r-- 4028 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isogrk1.ent
-rw-r--r-- 2344 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isogrk2.ent
-rw-r--r-- 3893 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isogrk3.ent
-rw-r--r-- 3591 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isogrk4.ent
-rw-r--r-- 5374 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isolat1.ent
-rw-r--r-- 8981 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isolat2.ent
-rw-r--r-- 4437 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isomfrk.ent
-rw-r--r-- 2619 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isomopf.ent
-rw-r--r-- 4540 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isomscr.ent
-rw-r--r-- 6091 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isonum.ent
-rw-r--r-- 6671 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isopub.ent
-rw-r--r-- 12156 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/isotech.ent
-rw-r--r-- 18647 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/journalmeta.ent
-rw-r--r-- 27850 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/link.ent
-rw-r--r-- 25198 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/list.ent
-rw-r--r-- 18005 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/math.ent
-rw-r--r-- 12673 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/mathml2-qname-1.mod
-rw-r--r-- 48831 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/mathml2.dtd
-rw-r--r-- 10261 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/mathmlsetup.ent
-rw-r--r-- 37100 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/mmlalias.ent
-rw-r--r-- 7956 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/mmlextra.ent
-rw-r--r-- 21162 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/modules.ent
-rw-r--r-- 4465 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd
-rw-r--r-- 5839 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmcommon_011101.dtd
-rw-r--r-- 7947 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmcommon_080101.dtd
-rw-r--r-- 8638 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmcommon_090101.dtd
-rw-r--r-- 2053 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedline_011101.dtd
-rw-r--r-- 3017 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedline_080101.dtd
-rw-r--r-- 3195 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedline_090101.dtd
-rw-r--r-- 6760 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd
-rw-r--r-- 5001 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd
-rw-r--r-- 5262 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd
-rw-r--r-- 9322 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd
-rw-r--r-- 9618 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd
-rw-r--r-- 9308 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd
-rw-r--r-- 5538 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmserials_080101.dtd
-rw-r--r-- 3185 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd
-rw-r--r-- 3317 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd
-rw-r--r-- 9484 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/notat.ent
-rw-r--r-- 23387 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/para.ent
-rw-r--r-- 15472 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/phrase.ent
-rw-r--r-- 25142 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/pmc-1.dtd
-rw-r--r-- 2714 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/pubmed_020114.dtd
-rw-r--r-- 3026 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/pubmed_080101.dtd
-rw-r--r-- 3059 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/pubmed_090101.dtd
-rw-r--r-- 3126 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/pubmed_100101.dtd
-rw-r--r-- 3434 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/pubmed_100301.dtd
-rw-r--r-- 3434 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/pubmed_110101.dtd
-rw-r--r-- 39289 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/references.ent
-rw-r--r-- 12953 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/section.ent
-rw-r--r-- 3936 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/taxon.dtd
-rw-r--r-- 13305 root root /usr/lib/python2.7/site-packages/Bio/Entrez/DTDs/xmlspecchars.ent
-rw-r--r-- 8982 root root /usr/lib/python2.7/site-packages/Bio/Enzyme/__init__.py
-rw-r--r-- 11867 root root /usr/lib/python2.7/site-packages/Bio/Enzyme/__init__.pyc
-rw-r--r-- 4440 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/Enzyme.py
-rw-r--r-- 4356 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/Enzyme.pyc
-rw-r--r-- 4771 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/Prodoc.py
-rw-r--r-- 5244 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/Prodoc.pyc
-rw-r--r-- 10909 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/Prosite.py
-rw-r--r-- 8492 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/Prosite.pyc
-rw-r--r-- 3920 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/ScanProsite.py
-rw-r--r-- 5110 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/ScanProsite.pyc
-rw-r--r-- 4374 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/__init__.py
-rw-r--r-- 4873 root root /usr/lib/python2.7/site-packages/Bio/ExPASy/__init__.pyc
-rw-r--r-- 3788 root root /usr/lib/python2.7/site-packages/Bio/FSSP/FSSPTools.py
-rw-r--r-- 3446 root root /usr/lib/python2.7/site-packages/Bio/FSSP/FSSPTools.pyc
-rw-r--r-- 8794 root root /usr/lib/python2.7/site-packages/Bio/FSSP/__init__.py
-rw-r--r-- 9610 root root /usr/lib/python2.7/site-packages/Bio/FSSP/__init__.pyc
-rw-r--r-- 847 root root /usr/lib/python2.7/site-packages/Bio/FSSP/fssp_rec.py
-rw-r--r-- 1763 root root /usr/lib/python2.7/site-packages/Bio/FSSP/fssp_rec.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover
-rw-r--r-- 2379 root root /usr/lib/python2.7/site-packages/Bio/GA/Evolver.py
-rw-r--r-- 2694 root root /usr/lib/python2.7/site-packages/Bio/GA/Evolver.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/GA/Mutation
-rw-r--r-- 6137 root root /usr/lib/python2.7/site-packages/Bio/GA/Organism.py
-rw-r--r-- 6735 root root /usr/lib/python2.7/site-packages/Bio/GA/Organism.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/GA/Repair
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection
-rw-r--r-- 87 root root /usr/lib/python2.7/site-packages/Bio/GA/__init__.py
-rw-r--r-- 199 root root /usr/lib/python2.7/site-packages/Bio/GA/__init__.pyc
-rw-r--r-- 2135 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/General.py
-rw-r--r-- 2351 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/General.pyc
-rw-r--r-- 6315 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/GeneralPoint.py
-rw-r--r-- 6835 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/GeneralPoint.pyc
-rw-r--r-- 817 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/Point.py
-rw-r--r-- 1285 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/Point.pyc
-rw-r--r-- 1068 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/TwoPoint.py
-rw-r--r-- 1545 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/TwoPoint.pyc
-rw-r--r-- 1736 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/Uniform.py
-rw-r--r-- 2022 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/Uniform.pyc
-rw-r--r-- 42 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/__init__.py
-rw-r--r-- 148 root root /usr/lib/python2.7/site-packages/Bio/GA/Crossover/__init__.pyc
-rw-r--r-- 1406 root root /usr/lib/python2.7/site-packages/Bio/GA/Mutation/General.py
-rw-r--r-- 1846 root root /usr/lib/python2.7/site-packages/Bio/GA/Mutation/General.pyc
-rw-r--r-- 3150 root root /usr/lib/python2.7/site-packages/Bio/GA/Mutation/Simple.py
-rw-r--r-- 3101 root root /usr/lib/python2.7/site-packages/Bio/GA/Mutation/Simple.pyc
-rw-r--r-- 42 root root /usr/lib/python2.7/site-packages/Bio/GA/Mutation/__init__.py
-rw-r--r-- 147 root root /usr/lib/python2.7/site-packages/Bio/GA/Mutation/__init__.pyc
-rw-r--r-- 2333 root root /usr/lib/python2.7/site-packages/Bio/GA/Repair/Stabilizing.py
-rw-r--r-- 2524 root root /usr/lib/python2.7/site-packages/Bio/GA/Repair/Stabilizing.pyc
-rw-r--r-- 42 root root /usr/lib/python2.7/site-packages/Bio/GA/Repair/__init__.py
-rw-r--r-- 145 root root /usr/lib/python2.7/site-packages/Bio/GA/Repair/__init__.pyc
-rw-r--r-- 2076 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/Abstract.py
-rw-r--r-- 2550 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/Abstract.pyc
-rw-r--r-- 3453 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/Diversity.py
-rw-r--r-- 3437 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/Diversity.pyc
-rw-r--r-- 4701 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/RouletteWheel.py
-rw-r--r-- 4104 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/RouletteWheel.pyc
-rw-r--r-- 2781 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/Tournament.py
-rw-r--r-- 2787 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/Tournament.pyc
-rw-r--r-- 42 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/__init__.py
-rw-r--r-- 148 root root /usr/lib/python2.7/site-packages/Bio/GA/Selection/__init__.pyc
-rw-r--r-- 4184 root root /usr/lib/python2.7/site-packages/Bio/GFF/GenericTools.py
-rw-r--r-- 7202 root root /usr/lib/python2.7/site-packages/Bio/GFF/GenericTools.pyc
-rw-r--r-- 15023 root root /usr/lib/python2.7/site-packages/Bio/GFF/__init__.py
-rw-r--r-- 17644 root root /usr/lib/python2.7/site-packages/Bio/GFF/__init__.pyc
-rw-r--r-- 1991 root root /usr/lib/python2.7/site-packages/Bio/GFF/binning.py
-rw-r--r-- 2496 root root /usr/lib/python2.7/site-packages/Bio/GFF/binning.pyc
-rw-r--r-- 21391 root root /usr/lib/python2.7/site-packages/Bio/GFF/easy.py
-rw-r--r-- 23691 root root /usr/lib/python2.7/site-packages/Bio/GFF/easy.pyc
-rw-r--r-- 9829 root root /usr/lib/python2.7/site-packages/Bio/GenBank/LocationParser.py
-rw-r--r-- 18847 root root /usr/lib/python2.7/site-packages/Bio/GenBank/LocationParser.pyc
-rw-r--r-- 22737 root root /usr/lib/python2.7/site-packages/Bio/GenBank/Record.py
-rw-r--r-- 21819 root root /usr/lib/python2.7/site-packages/Bio/GenBank/Record.pyc
-rw-r--r-- 79599 root root /usr/lib/python2.7/site-packages/Bio/GenBank/Scanner.py
-rw-r--r-- 52468 root root /usr/lib/python2.7/site-packages/Bio/GenBank/Scanner.pyc
-rw-r--r-- 52753 root root /usr/lib/python2.7/site-packages/Bio/GenBank/__init__.py
-rw-r--r-- 50558 root root /usr/lib/python2.7/site-packages/Bio/GenBank/__init__.pyc
-rw-r--r-- 1744 root root /usr/lib/python2.7/site-packages/Bio/GenBank/utils.py
-rw-r--r-- 2302 root root /usr/lib/python2.7/site-packages/Bio/GenBank/utils.pyc
-rw-r--r-- 3140 root root /usr/lib/python2.7/site-packages/Bio/Geo/Record.py
-rw-r--r-- 2638 root root /usr/lib/python2.7/site-packages/Bio/Geo/Record.pyc
-rw-r--r-- 1980 root root /usr/lib/python2.7/site-packages/Bio/Geo/__init__.py
-rw-r--r-- 1719 root root /usr/lib/python2.7/site-packages/Bio/Geo/__init__.pyc
-rw-r--r-- 16483 root root /usr/lib/python2.7/site-packages/Bio/Graphics/BasicChromosome.py
-rw-r--r-- 15754 root root /usr/lib/python2.7/site-packages/Bio/Graphics/BasicChromosome.pyc
-rw-r--r-- 6037 root root /usr/lib/python2.7/site-packages/Bio/Graphics/Comparative.py
-rw-r--r-- 6004 root root /usr/lib/python2.7/site-packages/Bio/Graphics/Comparative.pyc
-rw-r--r-- 6703 root root /usr/lib/python2.7/site-packages/Bio/Graphics/DisplayRepresentation.py
-rw-r--r-- 6717 root root /usr/lib/python2.7/site-packages/Bio/Graphics/DisplayRepresentation.pyc
-rw-r--r-- 9071 root root /usr/lib/python2.7/site-packages/Bio/Graphics/Distribution.py
-rw-r--r-- 8783 root root /usr/lib/python2.7/site-packages/Bio/Graphics/Distribution.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram
-rw-r--r-- 3307 root root /usr/lib/python2.7/site-packages/Bio/Graphics/__init__.py
-rw-r--r-- 2160 root root /usr/lib/python2.7/site-packages/Bio/Graphics/__init__.pyc
-rw-r--r-- 19541 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py
-rw-r--r-- 17433 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.pyc
-rw-r--r-- 51202 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py
-rw-r--r-- 31433 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.pyc
-rw-r--r-- 8430 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Colors.py
-rw-r--r-- 8333 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Colors.pyc
-rw-r--r-- 19400 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Diagram.py
-rw-r--r-- 17482 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Diagram.pyc
-rw-r--r-- 9688 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Feature.py
-rw-r--r-- 8396 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Feature.pyc
-rw-r--r-- 10919 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py
-rw-r--r-- 9117 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.pyc
-rw-r--r-- 9565 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Graph.py
-rw-r--r-- 9861 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Graph.pyc
-rw-r--r-- 7906 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py
-rw-r--r-- 8354 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_GraphSet.pyc
-rw-r--r-- 50476 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py
-rw-r--r-- 30283 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyc
-rw-r--r-- 15948 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Track.py
-rw-r--r-- 15020 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Track.pyc
-rw-r--r-- 887 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/__init__.py
-rw-r--r-- 377 root root /usr/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/__init__.pyc
-rw-r--r-- 12644 root root /usr/lib/python2.7/site-packages/Bio/HMM/DynamicProgramming.py
-rw-r--r-- 9343 root root /usr/lib/python2.7/site-packages/Bio/HMM/DynamicProgramming.pyc
-rw-r--r-- 19282 root root /usr/lib/python2.7/site-packages/Bio/HMM/MarkovModel.py
-rw-r--r-- 15954 root root /usr/lib/python2.7/site-packages/Bio/HMM/MarkovModel.pyc
-rw-r--r-- 16944 root root /usr/lib/python2.7/site-packages/Bio/HMM/Trainer.py
-rw-r--r-- 13009 root root /usr/lib/python2.7/site-packages/Bio/HMM/Trainer.pyc
-rw-r--r-- 2063 root root /usr/lib/python2.7/site-packages/Bio/HMM/Utilities.py
-rw-r--r-- 1432 root root /usr/lib/python2.7/site-packages/Bio/HMM/Utilities.pyc
-rw-r--r-- 89 root root /usr/lib/python2.7/site-packages/Bio/HMM/__init__.py
-rw-r--r-- 202 root root /usr/lib/python2.7/site-packages/Bio/HMM/__init__.pyc
-rw-r--r-- 8911 root root /usr/lib/python2.7/site-packages/Bio/InterPro/__init__.py
-rw-r--r-- 9691 root root /usr/lib/python2.7/site-packages/Bio/InterPro/__init__.pyc
-rw-r--r-- 8109 root root /usr/lib/python2.7/site-packages/Bio/KDTree/KDTree.py
-rw-r--r-- 8603 root root /usr/lib/python2.7/site-packages/Bio/KDTree/KDTree.pyc
-rwxr-xr-x 22964 root root /usr/lib/python2.7/site-packages/Bio/KDTree/_CKDTree.so
-rw-r--r-- 432 root root /usr/lib/python2.7/site-packages/Bio/KDTree/__init__.py
-rw-r--r-- 607 root root /usr/lib/python2.7/site-packages/Bio/KDTree/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Compound
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Enzyme
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Map
-rw-r--r-- 2731 root root /usr/lib/python2.7/site-packages/Bio/KEGG/__init__.py
-rw-r--r-- 2355 root root /usr/lib/python2.7/site-packages/Bio/KEGG/__init__.pyc
-rw-r--r-- 6888 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Compound/__init__.py
-rw-r--r-- 7650 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Compound/__init__.pyc
-rw-r--r-- 11577 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Enzyme/__init__.py
-rw-r--r-- 11782 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Enzyme/__init__.pyc
-rw-r--r-- 1549 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Map/__init__.py
-rw-r--r-- 1302 root root /usr/lib/python2.7/site-packages/Bio/KEGG/Map/__init__.pyc
-rw-r--r-- 4985 root root /usr/lib/python2.7/site-packages/Bio/Medline/__init__.py
-rw-r--r-- 5139 root root /usr/lib/python2.7/site-packages/Bio/Medline/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Motif/Applications
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers
-rw-r--r-- 3439 root root /usr/lib/python2.7/site-packages/Bio/Motif/Thresholds.py
-rw-r--r-- 4347 root root /usr/lib/python2.7/site-packages/Bio/Motif/Thresholds.pyc
-rw-r--r-- 26735 root root /usr/lib/python2.7/site-packages/Bio/Motif/_Motif.py
-rw-r--r-- 26594 root root /usr/lib/python2.7/site-packages/Bio/Motif/_Motif.pyc
-rw-r--r-- 4623 root root /usr/lib/python2.7/site-packages/Bio/Motif/__init__.py
-rw-r--r-- 4992 root root /usr/lib/python2.7/site-packages/Bio/Motif/__init__.pyc
-rwxr-xr-x 9836 root root /usr/lib/python2.7/site-packages/Bio/Motif/_pwm.so
-rw-r--r-- 3160 root root /usr/lib/python2.7/site-packages/Bio/Motif/Applications/_AlignAce.py
-rw-r--r-- 4583 root root /usr/lib/python2.7/site-packages/Bio/Motif/Applications/_AlignAce.pyc
-rw-r--r-- 397 root root /usr/lib/python2.7/site-packages/Bio/Motif/Applications/__init__.py
-rw-r--r-- 335 root root /usr/lib/python2.7/site-packages/Bio/Motif/Applications/__init__.pyc
-rw-r--r-- 8975 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/AlignAce.py
-rw-r--r-- 12339 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/AlignAce.pyc
-rw-r--r-- 4534 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/MAST.py
-rw-r--r-- 4843 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/MAST.pyc
-rw-r--r-- 37144 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/MEME.py
-rw-r--r-- 38903 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/MEME.pyc
-rw-r--r-- 0 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/__init__.py
-rw-r--r-- 149 root root /usr/lib/python2.7/site-packages/Bio/Motif/Parsers/__init__.pyc
-rw-r--r-- 2598 root root /usr/lib/python2.7/site-packages/Bio/NMR/NOEtools.py
-rw-r--r-- 1609 root root /usr/lib/python2.7/site-packages/Bio/NMR/NOEtools.pyc
-rw-r--r-- 156 root root /usr/lib/python2.7/site-packages/Bio/NMR/__init__.py
-rw-r--r-- 311 root root /usr/lib/python2.7/site-packages/Bio/NMR/__init__.pyc
-rw-r--r-- 7612 root root /usr/lib/python2.7/site-packages/Bio/NMR/xpktools.py
-rw-r--r-- 5566 root root /usr/lib/python2.7/site-packages/Bio/NMR/xpktools.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene
-rw-r--r-- 2857 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/StopTraining.py
-rw-r--r-- 3019 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/StopTraining.pyc
-rw-r--r-- 3027 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Training.py
-rw-r--r-- 3444 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Training.pyc
-rw-r--r-- 47 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/__init__.py
-rw-r--r-- 149 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/__init__.pyc
-rw-r--r-- 10989 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.py
-rw-r--r-- 10223 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.pyc
-rw-r--r-- 4128 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/Network.py
-rw-r--r-- 3827 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/Network.pyc
-rw-r--r-- 47 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.py
-rw-r--r-- 165 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.pyc
-rw-r--r-- 8203 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Motif.py
-rw-r--r-- 7091 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Motif.pyc
-rw-r--r-- 8953 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Pattern.py
-rw-r--r-- 8991 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Pattern.pyc
-rw-r--r-- 26127 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Schema.py
-rw-r--r-- 25135 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Schema.pyc
-rw-r--r-- 8956 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Signature.py
-rw-r--r-- 7054 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Signature.pyc
-rw-r--r-- 47 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/__init__.py
-rw-r--r-- 154 root root /usr/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/__init__.pyc
-rw-r--r-- 74994 root root /usr/lib/python2.7/site-packages/Bio/Nexus/Nexus.py
-rw-r--r-- 58100 root root /usr/lib/python2.7/site-packages/Bio/Nexus/Nexus.pyc
-rw-r--r-- 5759 root root /usr/lib/python2.7/site-packages/Bio/Nexus/Nodes.py
-rw-r--r-- 7498 root root /usr/lib/python2.7/site-packages/Bio/Nexus/Nodes.pyc
-rw-r--r-- 37719 root root /usr/lib/python2.7/site-packages/Bio/Nexus/Trees.py
-rw-r--r-- 29421 root root /usr/lib/python2.7/site-packages/Bio/Nexus/Trees.pyc
-rw-r--r-- 249 root root /usr/lib/python2.7/site-packages/Bio/Nexus/__init__.py
-rw-r--r-- 238 root root /usr/lib/python2.7/site-packages/Bio/Nexus/__init__.pyc
-rwxr-xr-x 5504 root root /usr/lib/python2.7/site-packages/Bio/Nexus/cnexus.so
-rw-r--r-- 3991 root root /usr/lib/python2.7/site-packages/Bio/PDB/AbstractPropertyMap.py
-rw-r--r-- 5420 root root /usr/lib/python2.7/site-packages/Bio/PDB/AbstractPropertyMap.pyc
-rw-r--r-- 8799 root root /usr/lib/python2.7/site-packages/Bio/PDB/Atom.py
-rw-r--r-- 11723 root root /usr/lib/python2.7/site-packages/Bio/PDB/Atom.pyc
-rw-r--r-- 3677 root root /usr/lib/python2.7/site-packages/Bio/PDB/Chain.py
-rw-r--r-- 4488 root root /usr/lib/python2.7/site-packages/Bio/PDB/Chain.pyc
-rw-r--r-- 5970 root root /usr/lib/python2.7/site-packages/Bio/PDB/DSSP.py
-rw-r--r-- 5926 root root /usr/lib/python2.7/site-packages/Bio/PDB/DSSP.pyc
-rw-r--r-- 1984 root root /usr/lib/python2.7/site-packages/Bio/PDB/Dice.py
-rw-r--r-- 2660 root root /usr/lib/python2.7/site-packages/Bio/PDB/Dice.pyc
-rw-r--r-- 7284 root root /usr/lib/python2.7/site-packages/Bio/PDB/Entity.py
-rw-r--r-- 10098 root root /usr/lib/python2.7/site-packages/Bio/PDB/Entity.pyc
-rw-r--r-- 9249 root root /usr/lib/python2.7/site-packages/Bio/PDB/FragmentMapper.py
-rw-r--r-- 10361 root root /usr/lib/python2.7/site-packages/Bio/PDB/FragmentMapper.pyc
-rw-r--r-- 11428 root root /usr/lib/python2.7/site-packages/Bio/PDB/HSExposure.py
-rw-r--r-- 10792 root root /usr/lib/python2.7/site-packages/Bio/PDB/HSExposure.pyc
-rw-r--r-- 5093 root root /usr/lib/python2.7/site-packages/Bio/PDB/MMCIF2Dict.py
-rw-r--r-- 3322 root root /usr/lib/python2.7/site-packages/Bio/PDB/MMCIF2Dict.pyc
-rw-r--r-- 5724 root root /usr/lib/python2.7/site-packages/Bio/PDB/MMCIFParser.py
-rw-r--r-- 4649 root root /usr/lib/python2.7/site-packages/Bio/PDB/MMCIFParser.pyc
-rw-r--r-- 1819 root root /usr/lib/python2.7/site-packages/Bio/PDB/Model.py
-rw-r--r-- 2286 root root /usr/lib/python2.7/site-packages/Bio/PDB/Model.pyc
-rw-r--r-- 6755 root root /usr/lib/python2.7/site-packages/Bio/PDB/NACCESS.py
-rw-r--r-- 5352 root root /usr/lib/python2.7/site-packages/Bio/PDB/NACCESS.pyc
-rw-r--r-- 4481 root root /usr/lib/python2.7/site-packages/Bio/PDB/NeighborSearch.py
-rw-r--r-- 4811 root root /usr/lib/python2.7/site-packages/Bio/PDB/NeighborSearch.pyc
-rw-r--r-- 513 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBExceptions.py
-rw-r--r-- 833 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBExceptions.pyc
-rw-r--r-- 6027 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBIO.py
-rw-r--r-- 6014 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBIO.pyc
-rw-r--r-- 14525 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBList.py
-rw-r--r-- 12245 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBList.pyc
-rw-r--r-- 12166 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBParser.py
-rw-r--r-- 8049 root root /usr/lib/python2.7/site-packages/Bio/PDB/PDBParser.pyc
-rw-r--r-- 2747 root root /usr/lib/python2.7/site-packages/Bio/PDB/PSEA.py
-rw-r--r-- 3567 root root /usr/lib/python2.7/site-packages/Bio/PDB/PSEA.pyc
-rw-r--r-- 14399 root root /usr/lib/python2.7/site-packages/Bio/PDB/Polypeptide.py
-rw-r--r-- 14554 root root /usr/lib/python2.7/site-packages/Bio/PDB/Polypeptide.pyc
-rw-r--r-- 4930 root root /usr/lib/python2.7/site-packages/Bio/PDB/Residue.py
-rw-r--r-- 5869 root root /usr/lib/python2.7/site-packages/Bio/PDB/Residue.pyc
-rw-r--r-- 4883 root root /usr/lib/python2.7/site-packages/Bio/PDB/ResidueDepth.py
-rw-r--r-- 5207 root root /usr/lib/python2.7/site-packages/Bio/PDB/ResidueDepth.pyc
-rw-r--r-- 2384 root root /usr/lib/python2.7/site-packages/Bio/PDB/Selection.py
-rw-r--r-- 2140 root root /usr/lib/python2.7/site-packages/Bio/PDB/Selection.pyc
-rw-r--r-- 1386 root root /usr/lib/python2.7/site-packages/Bio/PDB/Structure.py
-rw-r--r-- 2149 root root /usr/lib/python2.7/site-packages/Bio/PDB/Structure.pyc
-rw-r--r-- 3926 root root /usr/lib/python2.7/site-packages/Bio/PDB/StructureAlignment.py
-rw-r--r-- 3720 root root /usr/lib/python2.7/site-packages/Bio/PDB/StructureAlignment.pyc
-rw-r--r-- 10409 root root /usr/lib/python2.7/site-packages/Bio/PDB/StructureBuilder.py
-rw-r--r-- 7975 root root /usr/lib/python2.7/site-packages/Bio/PDB/StructureBuilder.pyc
-rw-r--r-- 2343 root root /usr/lib/python2.7/site-packages/Bio/PDB/Superimposer.py
-rw-r--r-- 2932 root root /usr/lib/python2.7/site-packages/Bio/PDB/Superimposer.pyc
-rw-r--r-- 9097 root root /usr/lib/python2.7/site-packages/Bio/PDB/Vector.py
-rw-r--r-- 11776 root root /usr/lib/python2.7/site-packages/Bio/PDB/Vector.pyc
-rw-r--r-- 2126 root root /usr/lib/python2.7/site-packages/Bio/PDB/__init__.py
-rw-r--r-- 1696 root root /usr/lib/python2.7/site-packages/Bio/PDB/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PDB/mmCIF
-rw-r--r-- 8959 root root /usr/lib/python2.7/site-packages/Bio/PDB/parse_pdb_header.py
-rw-r--r-- 6851 root root /usr/lib/python2.7/site-packages/Bio/PDB/parse_pdb_header.pyc
-rw-r--r-- 0 root root /usr/lib/python2.7/site-packages/Bio/PDB/mmCIF/__init__.py
-rw-r--r-- 145 root root /usr/lib/python2.7/site-packages/Bio/PDB/mmCIF/__init__.pyc
-rw-r--r-- 620 root root /usr/lib/python2.7/site-packages/Bio/Parsers/__init__.py
-rw-r--r-- 722 root root /usr/lib/python2.7/site-packages/Bio/Parsers/__init__.pyc
-rw-r--r-- 18904 root root /usr/lib/python2.7/site-packages/Bio/Parsers/spark.py
-rw-r--r-- 16206 root root /usr/lib/python2.7/site-packages/Bio/Parsers/spark.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep
-rw-r--r-- 10793 root root /usr/lib/python2.7/site-packages/Bio/Pathway/__init__.py
-rw-r--r-- 13611 root root /usr/lib/python2.7/site-packages/Bio/Pathway/__init__.pyc
-rw-r--r-- 6114 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/Graph.py
-rw-r--r-- 6843 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/Graph.pyc
-rw-r--r-- 3060 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/HashSet.py
-rw-r--r-- 5038 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/HashSet.pyc
-rw-r--r-- 6966 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/MultiGraph.py
-rw-r--r-- 8066 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/MultiGraph.pyc
-rw-r--r-- 336 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/__init__.py
-rw-r--r-- 440 root root /usr/lib/python2.7/site-packages/Bio/Pathway/Rep/__init__.pyc
-rw-r--r-- 34923 root root /usr/lib/python2.7/site-packages/Bio/Phylo/BaseTree.py
-rw-r--r-- 36898 root root /usr/lib/python2.7/site-packages/Bio/Phylo/BaseTree.pyc
-rw-r--r-- 1084 root root /usr/lib/python2.7/site-packages/Bio/Phylo/Newick.py
-rw-r--r-- 1580 root root /usr/lib/python2.7/site-packages/Bio/Phylo/Newick.pyc
-rw-r--r-- 9798 root root /usr/lib/python2.7/site-packages/Bio/Phylo/NewickIO.py
-rw-r--r-- 8636 root root /usr/lib/python2.7/site-packages/Bio/Phylo/NewickIO.pyc
-rw-r--r-- 2695 root root /usr/lib/python2.7/site-packages/Bio/Phylo/NexusIO.py
-rw-r--r-- 2938 root root /usr/lib/python2.7/site-packages/Bio/Phylo/NexusIO.pyc
-rw-r--r-- 44982 root root /usr/lib/python2.7/site-packages/Bio/Phylo/PhyloXML.py
-rw-r--r-- 51439 root root /usr/lib/python2.7/site-packages/Bio/Phylo/PhyloXML.pyc
-rw-r--r-- 33376 root root /usr/lib/python2.7/site-packages/Bio/Phylo/PhyloXMLIO.py
-rw-r--r-- 32505 root root /usr/lib/python2.7/site-packages/Bio/Phylo/PhyloXMLIO.pyc
-rw-r--r-- 486 root root /usr/lib/python2.7/site-packages/Bio/Phylo/__init__.py
-rw-r--r-- 543 root root /usr/lib/python2.7/site-packages/Bio/Phylo/__init__.pyc
-rw-r--r-- 3108 root root /usr/lib/python2.7/site-packages/Bio/Phylo/_io.py
-rw-r--r-- 2799 root root /usr/lib/python2.7/site-packages/Bio/Phylo/_io.pyc
-rw-r--r-- 903 root root /usr/lib/python2.7/site-packages/Bio/Phylo/_sugar.py
-rw-r--r-- 1120 root root /usr/lib/python2.7/site-packages/Bio/Phylo/_sugar.pyc
-rw-r--r-- 10213 root root /usr/lib/python2.7/site-packages/Bio/Phylo/_utils.py
-rw-r--r-- 10336 root root /usr/lib/python2.7/site-packages/Bio/Phylo/_utils.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PopGen/Async
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal
-rw-r--r-- 293 root root /usr/lib/python2.7/site-packages/Bio/PopGen/__init__.py
-rw-r--r-- 227 root root /usr/lib/python2.7/site-packages/Bio/PopGen/__init__.pyc
-rw-r--r-- 2004 root root /usr/lib/python2.7/site-packages/Bio/PopGen/Async/Local.py
-rw-r--r-- 2347 root root /usr/lib/python2.7/site-packages/Bio/PopGen/Async/Local.pyc
-rw-r--r-- 3522 root root /usr/lib/python2.7/site-packages/Bio/PopGen/Async/__init__.py
-rw-r--r-- 4899 root root /usr/lib/python2.7/site-packages/Bio/PopGen/Async/__init__.pyc
-rw-r--r-- 6811 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/Async.py
-rw-r--r-- 6769 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/Async.pyc
-rw-r--r-- 11146 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/Controller.py
-rw-r--r-- 10460 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/Controller.pyc
-rw-r--r-- 6997 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/Utils.py
-rw-r--r-- 5715 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/Utils.pyc
-rw-r--r-- 6360 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/__init__.py
-rw-r--r-- 8145 root root /usr/lib/python2.7/site-packages/Bio/PopGen/FDist/__init__.pyc
-rw-r--r-- 33106 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/Controller.py
-rw-r--r-- 34548 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/Controller.pyc
-rw-r--r-- 6648 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/EasyController.py
-rw-r--r-- 8143 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/EasyController.pyc
-rw-r--r-- 11373 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/FileParser.py
-rw-r--r-- 10285 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/FileParser.pyc
-rw-r--r-- 3937 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/LargeFileParser.py
-rw-r--r-- 3819 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/LargeFileParser.pyc
-rw-r--r-- 520 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/Utils.py
-rw-r--r-- 257 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/Utils.pyc
-rw-r--r-- 7340 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/__init__.py
-rw-r--r-- 7164 root root /usr/lib/python2.7/site-packages/Bio/PopGen/GenePop/__init__.pyc
-rw-r--r-- 1038 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Async.py
-rw-r--r-- 1652 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Async.pyc
-rw-r--r-- 2880 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Cache.py
-rw-r--r-- 3254 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Cache.pyc
-rw-r--r-- 2270 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Controller.py
-rw-r--r-- 2220 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Controller.pyc
-rw-r--r-- 7478 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Template.py
-rw-r--r-- 8401 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Template.pyc
-rw-r--r-- 593 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/__init__.py
-rw-r--r-- 487 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/__init__.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data
-rw-r--r-- 554 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/bottle.par
-rw-r--r-- 496 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/decline_lambda.par
-rw-r--r-- 620 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/decline_split.par
-rw-r--r-- 604 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/island.par
-rw-r--r-- 463 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/simple.par
-rw-r--r-- 731 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/split_island.par
-rw-r--r-- 735 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/split_ssm_1d.par
-rw-r--r-- 698 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/split_ssm_2d.par
-rw-r--r-- 607 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/ssm_1d.par
-rw-r--r-- 584 root root /usr/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data/ssm_2d.par
-rw-r--r-- 16587 root root /usr/lib/python2.7/site-packages/Bio/Prosite/Pattern.py
-rw-r--r-- 14963 root root /usr/lib/python2.7/site-packages/Bio/Prosite/Pattern.pyc
-rw-r--r-- 10822 root root /usr/lib/python2.7/site-packages/Bio/Prosite/Prodoc.py
-rw-r--r-- 13272 root root /usr/lib/python2.7/site-packages/Bio/Prosite/Prodoc.pyc
-rw-r--r-- 27006 root root /usr/lib/python2.7/site-packages/Bio/Prosite/__init__.py
-rw-r--r-- 28422 root root /usr/lib/python2.7/site-packages/Bio/Prosite/__init__.pyc
-rw-r--r-- 1166 root root /usr/lib/python2.7/site-packages/Bio/Restriction/DNAUtils.py
-rw-r--r-- 1128 root root /usr/lib/python2.7/site-packages/Bio/Restriction/DNAUtils.pyc
-rw-r--r-- 13734 root root /usr/lib/python2.7/site-packages/Bio/Restriction/PrintFormat.py
-rw-r--r-- 11884 root root /usr/lib/python2.7/site-packages/Bio/Restriction/PrintFormat.pyc
-rw-r--r-- 3234 root root /usr/lib/python2.7/site-packages/Bio/Restriction/RanaConfig.py
-rw-r--r-- 580 root root /usr/lib/python2.7/site-packages/Bio/Restriction/RanaConfig.pyc
-rw-r--r-- 83584 root root /usr/lib/python2.7/site-packages/Bio/Restriction/Restriction.py
-rw-r--r-- 89580 root root /usr/lib/python2.7/site-packages/Bio/Restriction/Restriction.pyc
-rw-r--r--438484 root root /usr/lib/python2.7/site-packages/Bio/Restriction/Restriction_Dictionary.py
-rw-r--r--467557 root root /usr/lib/python2.7/site-packages/Bio/Restriction/Restriction_Dictionary.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Restriction/_Update
-rw-r--r-- 8744 root root /usr/lib/python2.7/site-packages/Bio/Restriction/__init__.py
-rw-r--r-- 2778 root root /usr/lib/python2.7/site-packages/Bio/Restriction/__init__.pyc
-rw-r--r-- 37114 root root /usr/lib/python2.7/site-packages/Bio/Restriction/_Update/RestrictionCompiler.py
-rw-r--r-- 25772 root root /usr/lib/python2.7/site-packages/Bio/Restriction/_Update/RestrictionCompiler.pyc
-rw-r--r-- 3475 root root /usr/lib/python2.7/site-packages/Bio/Restriction/_Update/Update.py
-rw-r--r-- 5077 root root /usr/lib/python2.7/site-packages/Bio/Restriction/_Update/Update.pyc
-rw-r--r-- 0 root root /usr/lib/python2.7/site-packages/Bio/Restriction/_Update/__init__.py
-rw-r--r-- 155 root root /usr/lib/python2.7/site-packages/Bio/Restriction/_Update/__init__.pyc
-rw-r--r-- 3739 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Cla.py
-rw-r--r-- 4314 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Cla.pyc
-rw-r--r-- 2917 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Des.py
-rw-r--r-- 2969 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Des.pyc
-rw-r--r-- 2362 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Dom.py
-rw-r--r-- 2481 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Dom.pyc
-rw-r--r-- 2796 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Hie.py
-rw-r--r-- 2809 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Hie.pyc
-rw-r--r-- 12101 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Raf.py
-rw-r--r-- 13202 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Raf.pyc
-rw-r--r-- 2921 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Residues.py
-rw-r--r-- 2856 root root /usr/lib/python2.7/site-packages/Bio/SCOP/Residues.pyc
-rw-r--r-- 32657 root root /usr/lib/python2.7/site-packages/Bio/SCOP/__init__.py
-rw-r--r-- 30635 root root /usr/lib/python2.7/site-packages/Bio/SCOP/__init__.pyc
-rw-r--r-- 4860 root root /usr/lib/python2.7/site-packages/Bio/SVDSuperimposer/SVDSuperimposer.py
-rw-r--r-- 5419 root root /usr/lib/python2.7/site-packages/Bio/SVDSuperimposer/SVDSuperimposer.pyc
-rw-r--r-- 294 root root /usr/lib/python2.7/site-packages/Bio/SVDSuperimposer/__init__.py
-rw-r--r-- 478 root root /usr/lib/python2.7/site-packages/Bio/SVDSuperimposer/__init__.pyc
-rw-r--r-- 5358 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/AceIO.py
-rw-r--r-- 4302 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/AceIO.pyc
-rw-r--r-- 7618 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/FastaIO.py
-rw-r--r-- 6550 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/FastaIO.pyc
-rw-r--r-- 3718 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/IgIO.py
-rw-r--r-- 2550 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/IgIO.pyc
-rw-r--r-- 50909 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/InsdcIO.py
-rw-r--r-- 34316 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/InsdcIO.pyc
-rw-r--r-- 10886 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/Interfaces.py
-rw-r--r-- 10939 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/Interfaces.pyc
-rw-r--r-- 6588 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/PhdIO.py
-rw-r--r-- 5661 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/PhdIO.pyc
-rw-r--r-- 7113 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/PirIO.py
-rw-r--r-- 6166 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/PirIO.pyc
-rw-r--r-- 74832 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/QualityIO.py
-rw-r--r-- 65575 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/QualityIO.pyc
-rw-r--r-- 53635 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/SffIO.py
-rw-r--r-- 34830 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/SffIO.pyc
-rw-r--r-- 6792 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/SwissIO.py
-rw-r--r-- 5237 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/SwissIO.pyc
-rw-r--r-- 3968 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/TabIO.py
-rw-r--r-- 3945 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/TabIO.pyc
-rw-r--r-- 26980 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/UniprotIO.py
-rw-r--r-- 18191 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/UniprotIO.pyc
-rw-r--r-- 36877 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/__init__.py
-rw-r--r-- 31917 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/__init__.pyc
-rw-r--r-- 13386 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/_convert.py
-rw-r--r-- 12962 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/_convert.pyc
-rw-r--r-- 27462 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/_index.py
-rw-r--r-- 23786 root root /usr/lib/python2.7/site-packages/Bio/SeqIO/_index.pyc
-rw-r--r-- 4470 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/CheckSum.py
-rw-r--r-- 4000 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/CheckSum.pyc
-rw-r--r-- 6431 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/CodonUsage.py
-rw-r--r-- 6329 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/CodonUsage.pyc
-rw-r--r-- 910 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/CodonUsageIndices.py
-rw-r--r-- 1457 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/CodonUsageIndices.pyc
-rw-r--r-- 4300 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/IsoelectricPoint.py
-rw-r--r-- 3761 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/IsoelectricPoint.pyc
-rw-r--r-- 6401 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/MeltingTemp.py
-rw-r--r-- 4460 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/MeltingTemp.pyc
-rw-r--r-- 10842 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/ProtParam.py
-rw-r--r-- 10237 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/ProtParam.pyc
-rw-r--r-- 7547 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/ProtParamData.py
-rw-r--r-- 5122 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/ProtParamData.pyc
-rw-r--r-- 18874 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/__init__.py
-rw-r--r-- 19943 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/__init__.pyc
-rw-r--r-- 5880 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/lcc.py
-rw-r--r-- 3806 root root /usr/lib/python2.7/site-packages/Bio/SeqUtils/lcc.pyc
-rw-r--r-- 18825 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Ace.py
-rw-r--r-- 15984 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Ace.pyc
drwxr-xr-x 4096 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Applications
-rw-r--r-- 4715 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Phd.py
-rw-r--r-- 4239 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Phd.pyc
-rw-r--r-- 241 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/__init__.py
-rw-r--r-- 403 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/__init__.pyc
-rw-r--r-- 7456 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Applications/_Novoalign.py
-rw-r--r-- 8990 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Applications/_Novoalign.pyc
-rw-r--r-- 129 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Applications/__init__.py
-rw-r--r-- 333 root root /usr/lib/python2.7/site-packages/Bio/Sequencing/Applications/__init__.pyc
-rw-r--r-- 27 root root /usr/lib/python2.7/site-packages/Bio/Statistics/__init__.py
-rw-r--r-- 146 root root /usr/lib/python2.7/site-packages/Bio/Statistics/__init__.pyc
-rw-r--r-- 3884 root root /usr/lib/python2.7/site-packages/Bio/Statistics/lowess.py
-rw-r--r-- 3968 root root /usr/lib/python2.7/site-packages/Bio/Statistics/lowess.pyc
-rw-r--r-- 2610 root root /usr/lib/python2.7/site-packages/Bio/SubsMat/FreqTable.py
-rw-r--r-- 2103 root root /usr/lib/python2.7/site-packages/Bio/SubsMat/FreqTable.pyc
-rw-r--r--177442 root root /usr/lib/python2.7/site-packages/Bio/SubsMat/MatrixInfo.py
-rw-r--r--244632 root root /usr/lib/python2.7/site-packages/Bio/SubsMat/MatrixInfo.pyc
-rw-r--r-- 24693 root root /usr/lib/python2.7/site-packages/Bio/SubsMat/__init__.py
-rw-r--r-- 22082 root root /usr/lib/python2.7/site-packages/Bio/SubsMat/__init__.pyc
-rw-r--r-- 3171 root root /usr/lib/python2.7/site-packages/Bio/SwissProt/KeyWList.py
-rw-r--r-- 3145 root root /usr/lib/python2.7/site-packages/Bio/SwissProt/KeyWList.pyc
-rw-r--r-- 20449 root root /usr/lib/python2.7/site-packages/Bio/SwissProt/__init__.py
-rw-r--r-- 14399 root root /usr/lib/python2.7/site-packages/Bio/SwissProt/__init__.pyc
-rw-r--r-- 7146 root root /usr/lib/python2.7/site-packages/Bio/UniGene/UniGene.py
-rw-r--r-- 6632 root root /usr/lib/python2.7/site-packages/Bio/UniGene/UniGene.pyc
-rw-r--r-- 24840 root root /usr/lib/python2.7/site-packages/Bio/UniGene/__init__.py
-rw-r--r-- 29164 root root /usr/lib/python2.7/site-packages/Bio/UniGene/__init__.pyc
-rw-r--r-- 4695 root root /usr/lib/python2.7/site-packages/Bio/Wise/__init__.py
-rw-r--r-- 4105 root root /usr/lib/python2.7/site-packages/Bio/Wise/__init__.pyc
-rw-r--r-- 4323 root root /usr/lib/python2.7/site-packages/Bio/Wise/dnal.py
-rw-r--r-- 4918 root root /usr/lib/python2.7/site-packages/Bio/Wise/dnal.pyc
-rw-r--r-- 3736 root root /usr/lib/python2.7/site-packages/Bio/Wise/psw.py
-rw-r--r-- 5111 root root /usr/lib/python2.7/site-packages/Bio/Wise/psw.pyc
drwxr-xr-x 4096 root root /usr/share/doc/python-biopython
-rw-r--r-- 3429 root root /usr/share/doc/python-biopython/CONTRIB
-rw-r--r-- 18210 root root /usr/share/doc/python-biopython/DEPRECATED
-rw-r--r-- 1064 root root /usr/share/doc/python-biopython/LICENSE
-rw-r--r-- 46116 root root /usr/share/doc/python-biopython/NEWS
-rw-r--r-- 7482 root root /usr/share/doc/python-biopython/README