<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
<title>MPQC: sc::ConnollyShape Class Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css">
<link href="doxygen.css" rel="stylesheet" type="text/css">
</head><body>
<!-- Generated by Doxygen 1.5.9 -->
<div class="navigation" id="top">
<div class="tabs">
<ul>
<li><a href="index.html"><span>Main Page</span></a></li>
<li><a href="pages.html"><span>Related Pages</span></a></li>
<li class="current"><a href="annotated.html"><span>Classes</span></a></li>
<li><a href="files.html"><span>Files</span></a></li>
</ul>
</div>
<div class="tabs">
<ul>
<li><a href="annotated.html"><span>Class List</span></a></li>
<li><a href="hierarchy.html"><span>Class Hierarchy</span></a></li>
<li><a href="functions.html"><span>Class Members</span></a></li>
</ul>
</div>
<div class="navpath"><b>sc</b>::<a class="el" href="classsc_1_1ConnollyShape.html">ConnollyShape</a>
</div>
</div>
<div class="contents">
<h1>sc::ConnollyShape Class Reference</h1><!-- doxytag: class="sc::ConnollyShape" --><!-- doxytag: inherits="sc::Shape" --><a class="el" href="classsc_1_1DiscreteConnollyShape.html" title="DiscreteConnollyShape and ConnollyShape should produce the same result.">DiscreteConnollyShape</a> and <a class="el" href="classsc_1_1ConnollyShape.html" title="DiscreteConnollyShape and ConnollyShape should produce the same result.">ConnollyShape</a> should produce the same result.
<a href="#_details">More...</a>
<p>
<code>#include <<a class="el" href="molshape_8h_source.html">molshape.h</a>></code>
<p>
<div class="dynheader">
Inheritance diagram for sc::ConnollyShape:</div>
<div class="dynsection">
<p><center><img src="classsc_1_1ConnollyShape.png" usemap="#sc::ConnollyShape_map" border="0" alt=""></center>
<map name="sc::ConnollyShape_map">
<area href="classsc_1_1Shape.html" alt="sc::Shape" shape="rect" coords="65,336,185,360">
<area href="classsc_1_1Volume.html" alt="sc::Volume" shape="rect" coords="65,280,185,304">
<area href="classsc_1_1Function.html" alt="sc::Function" shape="rect" coords="65,224,185,248">
<area href="classsc_1_1SavableState.html" alt="sc::SavableState" shape="rect" coords="0,168,120,192">
<area href="classsc_1_1Compute.html" alt="sc::Compute" shape="rect" coords="130,168,250,192">
<area href="classsc_1_1DescribedClass.html" alt="sc::DescribedClass" shape="rect" coords="0,112,120,136">
<area href="classsc_1_1RefCount.html" alt="sc::RefCount" shape="rect" coords="0,56,120,80">
<area href="classsc_1_1Identity.html" alt="sc::Identity" shape="rect" coords="0,0,120,24">
</map>
</div>
<p>
<a href="classsc_1_1ConnollyShape-members.html">List of all members.</a><table border="0" cellpadding="0" cellspacing="0">
<tr><td></td></tr>
<tr><td colspan="2"><br><h2>Public Member Functions</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="53f2cef15bc962df474d6c60e9b2f377"></a><!-- doxytag: member="sc::ConnollyShape::ConnollyShape" ref="53f2cef15bc962df474d6c60e9b2f377" args="(const Ref< KeyVal > &)" -->
</td><td class="memItemRight" valign="bottom"><b>ConnollyShape</b> (const <a class="el" href="classsc_1_1Ref.html">Ref</a>< <a class="el" href="classsc_1_1KeyVal.html">KeyVal</a> > &)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="76105edd998eddab4ebf4a0511cd2e38"></a><!-- doxytag: member="sc::ConnollyShape::initialize" ref="76105edd998eddab4ebf4a0511cd2e38" args="(const Ref< Molecule > &, double probe_radius)" -->
void </td><td class="memItemRight" valign="bottom"><b>initialize</b> (const <a class="el" href="classsc_1_1Ref.html">Ref</a>< <a class="el" href="classsc_1_1Molecule.html">Molecule</a> > &, double probe_radius)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="8153fe126ecda8289bb212ebd6df63e8"></a><!-- doxytag: member="sc::ConnollyShape::clear" ref="8153fe126ecda8289bb212ebd6df63e8" args="()" -->
void </td><td class="memItemRight" valign="bottom"><b>clear</b> ()</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="bbd7d6dc65cfc27defd95a968fa81823"></a><!-- doxytag: member="sc::ConnollyShape::distance_to_surface" ref="bbd7d6dc65cfc27defd95a968fa81823" args="(const SCVector3 &r, SCVector3 *grad=0) const " -->
double </td><td class="memItemRight" valign="bottom"><b>distance_to_surface</b> (const SCVector3 &r, SCVector3 *grad=0) const </td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="809449cccf877b4803f3c82a574522e6"></a><!-- doxytag: member="sc::ConnollyShape::boundingbox" ref="809449cccf877b4803f3c82a574522e6" args="(double valuemin, double valuemax, SCVector3 &p1, SCVector3 &p2)" -->
void </td><td class="memItemRight" valign="bottom"><b>boundingbox</b> (double valuemin, double valuemax, SCVector3 &p1, SCVector3 &p2)</td></tr>
<tr><td colspan="2"><br><h2>Static Public Member Functions</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="fc5d77ccd8087cb4c04661c1ba4bfb0d"></a><!-- doxytag: member="sc::ConnollyShape::print_counts" ref="fc5d77ccd8087cb4c04661c1ba4bfb0d" args="(std::ostream &=ExEnv::out0())" -->
static void </td><td class="memItemRight" valign="bottom"><b>print_counts</b> (std::ostream &=ExEnv::out0())</td></tr>
</table>
<hr><a name="_details"></a><h2>Detailed Description</h2>
<a class="el" href="classsc_1_1DiscreteConnollyShape.html" title="DiscreteConnollyShape and ConnollyShape should produce the same result.">DiscreteConnollyShape</a> and <a class="el" href="classsc_1_1ConnollyShape.html" title="DiscreteConnollyShape and ConnollyShape should produce the same result.">ConnollyShape</a> should produce the same result.
<p>
The discrete version is a shape union of discrete subshapes and is slower. These classes describe the solvent accessible surface of a molecule. <hr>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="molshape_8h_source.html">molshape.h</a></ul>
</div>
<hr>
<address>
<small>
Generated at Wed Oct 14 14:12:13 2009 for <a
href="http://www.mpqc.org">MPQC</a>
2.3.1 using the documentation package <a
href="http://www.doxygen.org">Doxygen</a>
1.5.9.
</small>
</address>
</body>
</html>
distrib
>
Mandriva
>
2010.0
>
i586
>
media
>
contrib-release
>
by-pkgid
>
247b28499c443e092731ffba814075f2
>
files
>
185
