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<h1>vtkXYZMolReader Class Reference</h1><!-- doxytag: class="vtkXYZMolReader" --><!-- doxytag: inherits="vtkMoleculeReaderBase" --><code>#include <<a class="el" href="a05062.html">vtkXYZMolReader.h</a>></code>
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Inheritance diagram for vtkXYZMolReader:</div>
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<p><center><img src="a16361.png" border="0" usemap="#a16362" alt="Inheritance graph"></center>
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Collaboration diagram for vtkXYZMolReader:</div>
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<p><center><img src="a16363.png" border="0" usemap="#a16364" alt="Collaboration graph"></center>
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<a href="a16365.html">List of all members.</a><hr><a name="_details"></a><h2>Detailed Description</h2>
read Molecular Data files
<p>
<a class="el" href="a01963.html" title="read Molecular Data files">vtkXYZMolReader</a> is a source object that reads Molecule files The FileName must be specified<p>
<dl class="user" compact><dt><b>Thanks:</b></dt><dd>Dr. Jean M. Favre who developed and contributed this class</dd></dl>
<dl class="user" compact><dt><b>Tests:</b></dt><dd><a class="el" href="c2_vtk_t_19.html#c2_vtk_t_vtkXYZMolReader">vtkXYZMolReader (Tests)</a> </dd></dl>
<p>Definition at line <a class="el" href="a05062.html#l00034">34</a> of file <a class="el" href="a05062.html">vtkXYZMolReader.h</a>.</p>
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<tr><td colspan="2"><br><h2>Public Types</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">typedef <a class="el" href="a01047.html">vtkMoleculeReaderBase</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#12eed569e22099990e43ecfe483c03c0">Superclass</a></td></tr>
<tr><td colspan="2"><br><h2>Public Member Functions</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual const char * </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#f1c6592c980de4c858fd21f0fe7f508a">GetClassName</a> ()</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#9950a89969ebdf60a391640a82192f19">IsA</a> (const char *type)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#38c546b50cf2adcddfe8d153dfc97bc9">PrintSelf</a> (ostream &os, <a class="el" href="a00869.html">vtkIndent</a> indent)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#2f01d1b3a5bc8b4cb035e8d876ba784d">CanReadFile</a> (const char *name)</td></tr>
<tr><td colspan="2"><div class="groupHeader"></div></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#a6295b741c415f6498069741c7c22134">SetTimeStep</a> (int)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#a89e1c38c63d1f04438e3047f49285c2">GetTimeStep</a> ()</td></tr>
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<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#1dd7affc14c4c1edb248d218702ed33c">GetMaxTimeStep</a> ()</td></tr>
<tr><td colspan="2"><br><h2>Static Public Member Functions</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">static int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#d8e46894a732a094124d6914ed90bd44">IsTypeOf</a> (const char *type)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">static <a class="el" href="a01963.html">vtkXYZMolReader</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#a0b4b21c46909fd4be2d3cba5acfa0e4">SafeDownCast</a> (<a class="el" href="a01084.html">vtkObject</a> *o)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">static <a class="el" href="a01963.html">vtkXYZMolReader</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#1a83570aa5b80144063acdea91f1b75b">New</a> ()</td></tr>
<tr><td colspan="2"><br><h2>Protected Member Functions</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#6bb2d11d7b9f101b52308d6e40b5c421">vtkXYZMolReader</a> ()</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#e185e7a825d6e9bc14d17e587f7ec388">~vtkXYZMolReader</a> ()</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#d1482b1d57ecd744d604ca40dcbcacdf">ReadSpecificMolecule</a> (FILE *fp)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">char * </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#1cdd1e3020beca3217947cf15ae3f6a8">GetNextLine</a> (FILE *fp, char *line, int maxlen)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#cb436d34ff05c8453cdabd0d4270c1a3">GetLine1</a> (const char *line, int *cnt)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#ed35f813f820187bf54faf2d9d28675a">GetLine2</a> (const char *line, char *name)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#5e28bca092166c449a79367476adf823">GetAtom</a> (const char *line, char *atom, float *x)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#8bfcf33cf4627f0561a9310a63d90d55">InsertAtom</a> (const char *atom, float *pos)</td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#1ac84521b3f962afd3ed307548132acd">SetMaxTimeStep</a> (int)</td></tr>
<tr><td colspan="2"><br><h2>Protected Attributes</h2></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#fe0dd75c70170a56fd5c087acd99cd41">TimeStep</a></td></tr>
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="a01963.html#2856d572ab0441baf622c091bb668ea4">MaxTimeStep</a></td></tr>
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<hr><h2>Member Typedef Documentation</h2>
<a class="anchor" name="12eed569e22099990e43ecfe483c03c0"></a><!-- doxytag: member="vtkXYZMolReader::Superclass" ref="12eed569e22099990e43ecfe483c03c0" args="" -->
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<td class="memname">typedef <a class="el" href="a01047.html">vtkMoleculeReaderBase</a> <a class="el" href="a01047.html">vtkXYZMolReader::Superclass</a> </td>
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<p>Reimplemented from <a class="el" href="a01047.html#6b43af20a05f2179dbf59e0922445e29">vtkMoleculeReaderBase</a>.</p>
<p>Definition at line <a class="el" href="a05062.html#l00037">37</a> of file <a class="el" href="a05062.html">vtkXYZMolReader.h</a>.</p>
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<hr><h2>Constructor & Destructor Documentation</h2>
<a class="anchor" name="6bb2d11d7b9f101b52308d6e40b5c421"></a><!-- doxytag: member="vtkXYZMolReader::vtkXYZMolReader" ref="6bb2d11d7b9f101b52308d6e40b5c421" args="()" -->
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<td class="memname">vtkXYZMolReader::vtkXYZMolReader </td>
<td>(</td>
<td class="paramname"> </td>
<td> ) </td>
<td><code> [protected]</code></td>
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</div>
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<a class="anchor" name="e185e7a825d6e9bc14d17e587f7ec388"></a><!-- doxytag: member="vtkXYZMolReader::~vtkXYZMolReader" ref="e185e7a825d6e9bc14d17e587f7ec388" args="()" -->
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<td class="memname">vtkXYZMolReader::~vtkXYZMolReader </td>
<td>(</td>
<td class="paramname"> </td>
<td> ) </td>
<td><code> [protected]</code></td>
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<hr><h2>Member Function Documentation</h2>
<a class="anchor" name="f1c6592c980de4c858fd21f0fe7f508a"></a><!-- doxytag: member="vtkXYZMolReader::GetClassName" ref="f1c6592c980de4c858fd21f0fe7f508a" args="()" -->
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<td class="memname">virtual const char* vtkXYZMolReader::GetClassName </td>
<td>(</td>
<td class="paramname"> </td>
<td> ) </td>
<td><code> [virtual]</code></td>
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<p>Reimplemented from <a class="el" href="a01047.html#dbd4d926c2b6cf7b36acbee468562fc4">vtkMoleculeReaderBase</a>.</p>
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<a class="anchor" name="d8e46894a732a094124d6914ed90bd44"></a><!-- doxytag: member="vtkXYZMolReader::IsTypeOf" ref="d8e46894a732a094124d6914ed90bd44" args="(const char *type)" -->
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<td class="memname">static int vtkXYZMolReader::IsTypeOf </td>
<td>(</td>
<td class="paramtype">const char * </td>
<td class="paramname"> <em>name</em> </td>
<td> ) </td>
<td><code> [static]</code></td>
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Return 1 if this class type is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h.
<p>Reimplemented from <a class="el" href="a01047.html#67cd382507759a4766508bc3b2d5dab5">vtkMoleculeReaderBase</a>.</p>
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<a class="anchor" name="9950a89969ebdf60a391640a82192f19"></a><!-- doxytag: member="vtkXYZMolReader::IsA" ref="9950a89969ebdf60a391640a82192f19" args="(const char *type)" -->
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<td class="memname">virtual int vtkXYZMolReader::IsA </td>
<td>(</td>
<td class="paramtype">const char * </td>
<td class="paramname"> <em>name</em> </td>
<td> ) </td>
<td><code> [virtual]</code></td>
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Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h.
<p>Reimplemented from <a class="el" href="a01047.html#c8e8cc2e9c0de21b5b4356518c0d1be4">vtkMoleculeReaderBase</a>.</p>
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<a class="anchor" name="a0b4b21c46909fd4be2d3cba5acfa0e4"></a><!-- doxytag: member="vtkXYZMolReader::SafeDownCast" ref="a0b4b21c46909fd4be2d3cba5acfa0e4" args="(vtkObject *o)" -->
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<td class="memname">static <a class="el" href="a01963.html">vtkXYZMolReader</a>* vtkXYZMolReader::SafeDownCast </td>
<td>(</td>
<td class="paramtype"><a class="el" href="a01084.html">vtkObject</a> * </td>
<td class="paramname"> <em>o</em> </td>
<td> ) </td>
<td><code> [static]</code></td>
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<p>Reimplemented from <a class="el" href="a01047.html#c959a621927546dd6b46f55edd34c641">vtkMoleculeReaderBase</a>.</p>
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<a class="anchor" name="38c546b50cf2adcddfe8d153dfc97bc9"></a><!-- doxytag: member="vtkXYZMolReader::PrintSelf" ref="38c546b50cf2adcddfe8d153dfc97bc9" args="(ostream &os, vtkIndent indent)" -->
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<td class="memname">void vtkXYZMolReader::PrintSelf </td>
<td>(</td>
<td class="paramtype">ostream & </td>
<td class="paramname"> <em>os</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="a00869.html">vtkIndent</a> </td>
<td class="paramname"> <em>indent</em></td><td> </td>
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<td>)</td>
<td></td><td></td><td><code> [virtual]</code></td>
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Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use <a class="el" href="a01085.html#edadf6378465fd81c2592ef64262e2a5">Print()</a> instead) but used in the hierarchical print process to combine the output of several classes.
<p>Reimplemented from <a class="el" href="a01047.html#f00441ab0deefd92a09d7dd13f092ae3">vtkMoleculeReaderBase</a>.</p>
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<a class="anchor" name="1a83570aa5b80144063acdea91f1b75b"></a><!-- doxytag: member="vtkXYZMolReader::New" ref="1a83570aa5b80144063acdea91f1b75b" args="()" -->
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<td class="memname">static <a class="el" href="a01963.html">vtkXYZMolReader</a>* vtkXYZMolReader::New </td>
<td>(</td>
<td class="paramname"> </td>
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<td><code> [static]</code></td>
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Create an object with Debug turned off, modified time initialized to zero, and reference counting on.
<p>Reimplemented from <a class="el" href="a01261.html#cf785ac526132296ff652c636f713b5e">vtkPolyDataAlgorithm</a>.</p>
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<a class="anchor" name="2f01d1b3a5bc8b4cb035e8d876ba784d"></a><!-- doxytag: member="vtkXYZMolReader::CanReadFile" ref="2f01d1b3a5bc8b4cb035e8d876ba784d" args="(const char *name)" -->
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<td class="memname">virtual int vtkXYZMolReader::CanReadFile </td>
<td>(</td>
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<td><code> [virtual]</code></td>
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Test whether the file with the given name can be read by this reader.
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<a class="anchor" name="a6295b741c415f6498069741c7c22134"></a><!-- doxytag: member="vtkXYZMolReader::SetTimeStep" ref="a6295b741c415f6498069741c7c22134" args="(int)" -->
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<td class="memname">virtual void vtkXYZMolReader::SetTimeStep </td>
<td>(</td>
<td class="paramtype">int </td>
<td class="paramname"> </td>
<td> ) </td>
<td><code> [virtual]</code></td>
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Set the current time step. It should be greater than 0 and smaller than MaxTimeStep.
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<a class="anchor" name="a89e1c38c63d1f04438e3047f49285c2"></a><!-- doxytag: member="vtkXYZMolReader::GetTimeStep" ref="a89e1c38c63d1f04438e3047f49285c2" args="()" -->
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<td class="memname">virtual int vtkXYZMolReader::GetTimeStep </td>
<td>(</td>
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<td> ) </td>
<td><code> [virtual]</code></td>
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Set the current time step. It should be greater than 0 and smaller than MaxTimeStep.
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<a class="anchor" name="1dd7affc14c4c1edb248d218702ed33c"></a><!-- doxytag: member="vtkXYZMolReader::GetMaxTimeStep" ref="1dd7affc14c4c1edb248d218702ed33c" args="()" -->
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<td class="memname">virtual int vtkXYZMolReader::GetMaxTimeStep </td>
<td>(</td>
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<td> ) </td>
<td><code> [virtual]</code></td>
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Get the maximum time step.
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<a class="anchor" name="d1482b1d57ecd744d604ca40dcbcacdf"></a><!-- doxytag: member="vtkXYZMolReader::ReadSpecificMolecule" ref="d1482b1d57ecd744d604ca40dcbcacdf" args="(FILE *fp)" -->
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<td class="memname">void vtkXYZMolReader::ReadSpecificMolecule </td>
<td>(</td>
<td class="paramtype">FILE * </td>
<td class="paramname"> <em>fp</em> </td>
<td> ) </td>
<td><code> [protected, virtual]</code></td>
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<p>
<p>Implements <a class="el" href="a01047.html#84d9017d2a3adf6a443c0697fd3d6a27">vtkMoleculeReaderBase</a>.</p>
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<a class="anchor" name="1cdd1e3020beca3217947cf15ae3f6a8"></a><!-- doxytag: member="vtkXYZMolReader::GetNextLine" ref="1cdd1e3020beca3217947cf15ae3f6a8" args="(FILE *fp, char *line, int maxlen)" -->
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<td class="memname">char* vtkXYZMolReader::GetNextLine </td>
<td>(</td>
<td class="paramtype">FILE * </td>
<td class="paramname"> <em>fp</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">char * </td>
<td class="paramname"> <em>line</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">int </td>
<td class="paramname"> <em>maxlen</em></td><td> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td><td><code> [protected]</code></td>
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<p>
Get next line that is not a comment. It returns the beginning of data on line (skips empty spaces)
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<a class="anchor" name="cb436d34ff05c8453cdabd0d4270c1a3"></a><!-- doxytag: member="vtkXYZMolReader::GetLine1" ref="cb436d34ff05c8453cdabd0d4270c1a3" args="(const char *line, int *cnt)" -->
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<td class="memname">int vtkXYZMolReader::GetLine1 </td>
<td>(</td>
<td class="paramtype">const char * </td>
<td class="paramname"> <em>line</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">int * </td>
<td class="paramname"> <em>cnt</em></td><td> </td>
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<td></td>
<td>)</td>
<td></td><td></td><td><code> [protected]</code></td>
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<p>
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<a class="anchor" name="ed35f813f820187bf54faf2d9d28675a"></a><!-- doxytag: member="vtkXYZMolReader::GetLine2" ref="ed35f813f820187bf54faf2d9d28675a" args="(const char *line, char *name)" -->
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<td class="memname">int vtkXYZMolReader::GetLine2 </td>
<td>(</td>
<td class="paramtype">const char * </td>
<td class="paramname"> <em>line</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">char * </td>
<td class="paramname"> <em>name</em></td><td> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td></td><td><code> [protected]</code></td>
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<p>
</div>
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<a class="anchor" name="5e28bca092166c449a79367476adf823"></a><!-- doxytag: member="vtkXYZMolReader::GetAtom" ref="5e28bca092166c449a79367476adf823" args="(const char *line, char *atom, float *x)" -->
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<td class="memname">int vtkXYZMolReader::GetAtom </td>
<td>(</td>
<td class="paramtype">const char * </td>
<td class="paramname"> <em>line</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">char * </td>
<td class="paramname"> <em>atom</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">float * </td>
<td class="paramname"> <em>x</em></td><td> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td><td><code> [protected]</code></td>
</tr>
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<div class="memdoc">
<p>
</div>
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<a class="anchor" name="8bfcf33cf4627f0561a9310a63d90d55"></a><!-- doxytag: member="vtkXYZMolReader::InsertAtom" ref="8bfcf33cf4627f0561a9310a63d90d55" args="(const char *atom, float *pos)" -->
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<td class="memname">void vtkXYZMolReader::InsertAtom </td>
<td>(</td>
<td class="paramtype">const char * </td>
<td class="paramname"> <em>atom</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">float * </td>
<td class="paramname"> <em>pos</em></td><td> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td><td><code> [protected]</code></td>
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<p>
</div>
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<a class="anchor" name="1ac84521b3f962afd3ed307548132acd"></a><!-- doxytag: member="vtkXYZMolReader::SetMaxTimeStep" ref="1ac84521b3f962afd3ed307548132acd" args="(int)" -->
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<td class="memname">virtual void vtkXYZMolReader::SetMaxTimeStep </td>
<td>(</td>
<td class="paramtype">int </td>
<td class="paramname"> </td>
<td> ) </td>
<td><code> [protected, virtual]</code></td>
</tr>
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<p>
</div>
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<hr><h2>Member Data Documentation</h2>
<a class="anchor" name="fe0dd75c70170a56fd5c087acd99cd41"></a><!-- doxytag: member="vtkXYZMolReader::TimeStep" ref="fe0dd75c70170a56fd5c087acd99cd41" args="" -->
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<td class="memname">int <a class="el" href="a01963.html#fe0dd75c70170a56fd5c087acd99cd41">vtkXYZMolReader::TimeStep</a><code> [protected]</code> </td>
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<p>
<p>Definition at line <a class="el" href="a05062.html#l00073">73</a> of file <a class="el" href="a05062.html">vtkXYZMolReader.h</a>.</p>
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<a class="anchor" name="2856d572ab0441baf622c091bb668ea4"></a><!-- doxytag: member="vtkXYZMolReader::MaxTimeStep" ref="2856d572ab0441baf622c091bb668ea4" args="" -->
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<td class="memname">int <a class="el" href="a01963.html#2856d572ab0441baf622c091bb668ea4">vtkXYZMolReader::MaxTimeStep</a><code> [protected]</code> </td>
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</table>
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<div class="memdoc">
<p>
<p>Definition at line <a class="el" href="a05062.html#l00076">76</a> of file <a class="el" href="a05062.html">vtkXYZMolReader.h</a>.</p>
</div>
</div><p>
<hr>The documentation for this class was generated from the following file:<ul>
<li>dox/IO/<a class="el" href="a05062.html">vtkXYZMolReader.h</a></ul>
</div>
<hr size="1"><address style="text-align: right;"><small>Generated on Wed Jun 3 19:50:18 2009 for VTK by
<a href="http://www.doxygen.org/index.html">
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.6 </small></address>
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