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Sophie

distrib > Mandriva > 2010.0 > i586 > media > contrib-release > by-pkgid > 66402f0e87e800e6a01ae8b6b60a1242 > files

perl-bioperl-run-1.6.1-2mdv2010.0.noarch.rpm

Files

-rwxr-xr-x 8441 root root /usr/bin/bp_bioperl_application_installer.pl
-rwxr-xr-x 3634 root root /usr/bin/bp_multi_hmmsearch.pl
-rwxr-xr-x 23800 root root /usr/bin/bp_panalysis.pl
-rwxr-xr-x 15109 root root /usr/bin/bp_papplmaker.pl
-rwxr-xr-x 1412 root root /usr/bin/bp_run_neighbor.pl
-rwxr-xr-x 2230 root root /usr/bin/bp_run_protdist.pl
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Factory
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools
-rw-r--r-- 7172 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Factory/EMBOSS.pm
-rw-r--r-- 3611 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/Clustalw.pm
-rw-r--r-- 4833 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/EMBOSS.pm
-rw-r--r-- 8862 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/Generic.pm
-rw-r--r-- 3441 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/Hyphy.pm
-rw-r--r-- 3501 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/Muscle.pm
-rw-r--r-- 5209 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/PAML.pm
-rw-r--r-- 4682 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/Probcons.pm
-rw-r--r-- 3445 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/SLR.pm
-rw-r--r-- 3675 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Installer/TCoffee.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Analysis
-rw-r--r-- 24357 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Analysis.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/AnalysisFactory
-rw-r--r-- 10946 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/AnalysisFactory.pm
-rw-r--r-- 4925 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Cap3.pm
-rwxr-xr-x 7790 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Coil.pm
-rw-r--r-- 9651 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/EMBOSSApplication.pm
-rw-r--r-- 10344 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/EMBOSSacd.pm
-rw-r--r-- 10925 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/ERPIN.pm
-rw-r--r-- 14298 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Ensembl.pm
-rw-r--r-- 10157 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Eponine.pm
-rw-r--r-- 16209 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/FootPrinter.pm
-rw-r--r-- 8748 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Genemark.pm
-rw-r--r-- 12708 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Genewise.pm
-rw-r--r-- 6011 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Genscan.pm
-rw-r--r-- 11696 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Glimmer.pm
-rwxr-xr-x 17416 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Hmmer.pm
-rw-r--r-- 20560 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Infernal.pm
-rwxr-xr-x 9764 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/MCS.pm
-rw-r--r-- 7795 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Match.pm
-rw-r--r-- 10470 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Mdust.pm
-rw-r--r-- 12032 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Meme.pm
-rwxr-xr-x 7638 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phrap.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo
-rw-r--r-- 11869 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Primate.pm
-rw-r--r-- 27854 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Primer3.pm
-rwxr-xr-x 6775 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Prints.pm
-rwxr-xr-x 6965 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Profile.pm
-rw-r--r-- 10655 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Promoterwise.pm
-rw-r--r-- 11373 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Pseudowise.pm
-rw-r--r-- 14210 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/RNAMotif.pm
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-rwxr-xr-x 6538 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Seg.pm
-rwxr-xr-x 7179 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Signalp.pm
-rw-r--r-- 15010 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Simprot.pm
-rw-r--r-- 15161 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/TigrAssembler.pm
-rwxr-xr-x 7905 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Tmhmm.pm
-rw-r--r-- 28647 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/TribeMCL.pm
-rw-r--r-- 21480 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Vista.pm
-rw-r--r-- 7111 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/tRNAscanSE.pm
-rw-r--r-- 14563 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Amap.pm
-rwxr-xr-x 6582 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Blat.pm
-rw-r--r-- 31081 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Clustalw.pm
-rw-r--r-- 18206 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/DBA.pm
-rwxr-xr-x 8015 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Exonerate.pm
-rw-r--r-- 14149 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Kalign.pm
-rw-r--r-- 19696 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Lagan.pm
-rw-r--r-- 13965 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/MAFFT.pm
-rw-r--r-- 16997 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Muscle.pm
-rwxr-xr-x 9161 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Pal2Nal.pm
-rw-r--r-- 14034 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Probalign.pm
-rw-r--r-- 15152 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Probcons.pm
-rw-r--r-- 14042 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Proda.pm
-rw-r--r-- 10685 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/Sim4.pm
-rw-r--r-- 15058 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/StandAloneFasta.pm
-rw-r--r-- 38186 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Alignment/TCoffee.pm
-rw-r--r-- 22291 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Analysis/soap.pm
-rw-r--r-- 9264 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/AnalysisFactory/soap.pm
-rwxr-xr-x 9772 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Gerp.pm
-rw-r--r-- 13209 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Gumby.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Hyphy
-rw-r--r-- 12611 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/LVB.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Molphy
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Njtree
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/PAML
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phast
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phylip
-rwxr-xr-x 8599 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/PhyloBase.pm
-rw-r--r-- 24104 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phyml.pm
-rw-r--r-- 8687 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/QuickTree.pm
-rw-r--r-- 26615 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/SLR.pm
-rwxr-xr-x 10599 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Semphy.pm
-rw-r--r-- 13398 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Hyphy/Base.pm
-rw-r--r-- 11584 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
-rw-r--r-- 9648 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
-rw-r--r-- 9700 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Hyphy/REL.pm
-rw-r--r-- 14096 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
-rw-r--r-- 19083 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
-rw-r--r-- 15187 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Njtree/Best.pm
-rw-r--r-- 20230 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/PAML/Baseml.pm
-rw-r--r-- 26603 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/PAML/Codeml.pm
-rw-r--r-- 22196 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/PAML/Evolver.pm
-rw-r--r-- 13348 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/PAML/Yn00.pm
-rw-r--r-- 15644 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
-rw-r--r-- 10522 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
-rw-r--r-- 4782 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phylip/Base.pm
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-rw-r--r-- 11157 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
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-rw-r--r-- 17144 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
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-rw-r--r-- 18599 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
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-rw-r--r-- 15224 root root /usr/lib/perl5/vendor_perl/5.10.1/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
drwxr-xr-x 4096 root root /usr/share/doc/perl-bioperl-run
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-r--r--r-- 4711 root root /usr/share/doc/perl-bioperl-run/Changes
-r--r--r-- 4527 root root /usr/share/doc/perl-bioperl-run/INSTALL.PROGRAMS
-r--r--r-- 41656 root root /usr/share/doc/perl-bioperl-run/LICENSE
-r--r--r-- 576 root root /usr/share/doc/perl-bioperl-run/README
-rw-r--r-- 2028 root root /usr/share/man/man1/bp_bioperl_application_installer.pl.1.lzma
-rw-r--r-- 2397 root root /usr/share/man/man1/bp_multi_hmmsearch.pl.1.lzma
-rw-r--r-- 6502 root root /usr/share/man/man1/bp_panalysis.pl.1.lzma
-rw-r--r-- 3904 root root /usr/share/man/man1/bp_papplmaker.pl.1.lzma
-rw-r--r-- 1979 root root /usr/share/man/man1/bp_run_neighbor.pl.1.lzma
-rw-r--r-- 2204 root root /usr/share/man/man1/bp_run_protdist.pl.1.lzma
-rw-r--r-- 3418 root root /usr/share/man/man3/Bio::Factory::EMBOSS.3pm.lzma
-rw-r--r-- 2512 root root /usr/share/man/man3/Bio::Installer::Clustalw.3pm.lzma
-rw-r--r-- 2550 root root /usr/share/man/man3/Bio::Installer::EMBOSS.3pm.lzma
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-rw-r--r-- 2510 root root /usr/share/man/man3/Bio::Installer::Muscle.3pm.lzma
-rw-r--r-- 2534 root root /usr/share/man/man3/Bio::Installer::PAML.3pm.lzma
-rw-r--r-- 2551 root root /usr/share/man/man3/Bio::Installer::Probcons.3pm.lzma
-rw-r--r-- 2507 root root /usr/share/man/man3/Bio::Installer::SLR.3pm.lzma
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-rw-r--r-- 4558 root root /usr/share/man/man3/Bio::Tools::Run::Alignment::Amap.3pm.lzma
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-rw-r--r-- 3763 root root /usr/share/man/man3/Bio::Tools::Run::Alignment::DBA.3pm.lzma
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