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<h1>itkBioCellularAggregate.h</h1><a href="itkBioCellularAggregate_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span>
<a name="l00002"></a>00002 <span class="comment"></span>
<a name="l00003"></a>00003 <span class="comment"> Program: Insight Segmentation & Registration Toolkit</span>
<a name="l00004"></a>00004 <span class="comment"> Module: $RCSfile: itkBioCellularAggregate.h,v $</span>
<a name="l00005"></a>00005 <span class="comment"> Language: C++</span>
<a name="l00006"></a>00006 <span class="comment"> Date: $Date: 2008-10-20 21:28:20 $</span>
<a name="l00007"></a>00007 <span class="comment"> Version: $Revision: 1.8 $</span>
<a name="l00008"></a>00008 <span class="comment"></span>
<a name="l00009"></a>00009 <span class="comment"> Copyright (c) Insight Software Consortium. All rights reserved.</span>
<a name="l00010"></a>00010 <span class="comment"> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span>
<a name="l00011"></a>00011 <span class="comment"></span>
<a name="l00012"></a>00012 <span class="comment"> This software is distributed WITHOUT ANY WARRANTY; without even</span>
<a name="l00013"></a>00013 <span class="comment"> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR</span>
<a name="l00014"></a>00014 <span class="comment"> PURPOSE. See the above copyright notices for more information.</span>
<a name="l00015"></a>00015 <span class="comment"></span>
<a name="l00016"></a>00016 <span class="comment">=========================================================================*/</span>
<a name="l00017"></a>00017 <span class="preprocessor">#ifndef __itkBioCellularAggregate_h</span>
<a name="l00018"></a>00018 <span class="preprocessor"></span><span class="preprocessor">#define __itkBioCellularAggregate_h</span>
<a name="l00019"></a>00019 <span class="preprocessor"></span>
<a name="l00020"></a>00020 <span class="preprocessor">#include "<a class="code" href="itkBioCellularAggregateBase_8h.html">itkBioCellularAggregateBase.h</a>"</span>
<a name="l00021"></a>00021 <span class="preprocessor">#include "<a class="code" href="itkDefaultDynamicMeshTraits_8h.html">itkDefaultDynamicMeshTraits.h</a>"</span>
<a name="l00022"></a>00022 <span class="preprocessor">#include "<a class="code" href="itkMesh_8h.html">itkMesh.h</a>"</span>
<a name="l00023"></a>00023 <span class="preprocessor">#include "<a class="code" href="itkImage_8h.html">itkImage.h</a>"</span>
<a name="l00024"></a>00024 <span class="preprocessor">#include "<a class="code" href="itkBioCell_8h.html">itkBioCell.h</a>"</span>
<a name="l00025"></a>00025 <span class="preprocessor">#include "<a class="code" href="itkPolygonCell_8h.html">itkPolygonCell.h</a>"</span>
<a name="l00026"></a>00026
<a name="l00027"></a>00027 <span class="preprocessor">#include <iostream></span>
<a name="l00028"></a>00028 <span class="preprocessor">#include <vector></span>
<a name="l00029"></a>00029
<a name="l00030"></a>00030
<a name="l00031"></a>00031 <span class="keyword">namespace </span>itk {
<a name="l00032"></a>00032
<a name="l00033"></a>00033 <span class="keyword">namespace </span>bio {
<a name="l00034"></a>00034
<a name="l00040"></a>00040 <span class="keyword">template</span><<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> NSpaceDimension=3>
<a name="l00041"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html">00041</a> <span class="keyword">class </span><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html" title="This class represent an aggregation of bio::Cell objects This class is the base for...">CellularAggregate</a> : <span class="keyword">public</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregateBase.html" title="Base class for the CellularAggregates. This base class is not templated over the...">CellularAggregateBase</a>
<a name="l00042"></a>00042 {
<a name="l00043"></a>00043 <span class="keyword">public</span>:
<a name="l00045"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#a8c1688c8e4f43efc30157df1bc1d798">00045</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html" title="This class represent an aggregation of bio::Cell objects This class is the base for...">CellularAggregate</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html" title="This class represent an aggregation of bio::Cell objects This class is the base for...">Self</a>;
<a name="l00046"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#0292feb3273f430b03e6c68dce2e0fd7">00046</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregateBase.html" title="Base class for the CellularAggregates. This base class is not templated over the...">CellularAggregateBase</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregateBase.html" title="Base class for the CellularAggregates. This base class is not templated over the...">Superclass</a>;
<a name="l00047"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#24de0867e489f98adde5a2ff8fa55687">00047</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<Self></a> <a class="code" href="classitk_1_1SmartPointer.html">Pointer</a>;
<a name="l00048"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fd45d8c1fda3504e8e08cf27b70f5aa0">00048</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<const Self></a> <a class="code" href="classitk_1_1SmartPointer.html">ConstPointer</a>;
<a name="l00049"></a>00049
<a name="l00050"></a>00050 <span class="comment">/*** Run-time type information (and related methods). */</span>
<a name="l00051"></a>00051 <a class="code" href="itkMacro_8h.html#574c1f86661d409dd32c742307a0e96a">itkTypeMacro</a>(BioCellularAggregate, <a class="code" href="classitk_1_1bio_1_1CellularAggregateBase.html" title="Base class for the CellularAggregates. This base class is not templated over the...">CellularAggregateBase</a>);
<a name="l00052"></a>00052
<a name="l00054"></a>00054 <a class="code" href="itkMacro_8h.html#0fdc15685afa271857c57e7cd482f30c">itkNewMacro</a>(<a class="code" href="classitk_1_1bio_1_1CellularAggregate.html" title="This class represent an aggregation of bio::Cell objects This class is the base for...">Self</a>);
<a name="l00055"></a>00055
<a name="l00056"></a>00056 <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#dc6aebf482a05e715d90a65533441e33">itkStaticConstMacro</a>( SpaceDimension, <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>, NSpaceDimension);
<a name="l00057"></a>00057
<a name="l00058"></a>00058 <span class="comment">/*** Type to be used for data associated with each point in the mesh. */</span>
<a name="l00059"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#90f76b02389ab0c1b60289f0be3e535c">00059</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1bio_1_1Cell.html" title="This class implement the minimal behavior of a biological cell. The basic behavior...">Cell<NSpaceDimension></a> <a class="code" href="classitk_1_1bio_1_1Cell.html" title="This class implement the minimal behavior of a biological cell. The basic behavior...">BioCellType</a>;
<a name="l00060"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#c79142063eff1f4a8ca115e5b6176907">00060</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1bio_1_1Cell.html" title="This class implement the minimal behavior of a biological cell. The basic behavior...">BioCellType</a> * <a class="code" href="classitk_1_1bio_1_1Cell.html" title="This class implement the minimal behavior of a biological cell. The basic behavior...">PointPixelType</a>;
<a name="l00061"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#53368c09ed973ace0cb4873fd4ee782f">00061</a> <span class="keyword">typedef</span> <span class="keywordtype">double</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#53368c09ed973ace0cb4873fd4ee782f">CellPixelType</a>;
<a name="l00062"></a>00062
<a name="l00063"></a>00063
<a name="l00065"></a>00065 <span class="keyword">typedef</span> <a class="code" href="classitk_1_1DefaultDynamicMeshTraits.html">DefaultDynamicMeshTraits</a><
<a name="l00066"></a>00066 <a class="code" href="classitk_1_1bio_1_1Cell.html" title="This class implement the minimal behavior of a biological cell. The basic behavior...">PointPixelType</a>, <span class="comment">// PixelType</span>
<a name="l00067"></a>00067 NSpaceDimension, <span class="comment">// Points Dimension</span>
<a name="l00068"></a>00068 NSpaceDimension, <span class="comment">// Max.Topological Dimension</span>
<a name="l00069"></a>00069 double, <span class="comment">// Type for coordinates</span>
<a name="l00070"></a>00070 double, <span class="comment">// Type for interpolation </span>
<a name="l00071"></a>00071 <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#53368c09ed973ace0cb4873fd4ee782f">CellPixelType</a> <span class="comment">// Type for values in the cells </span>
<a name="l00072"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fd4463dea5c45267a4ed29c02a3fa2f1">00072</a> > <a class="code" href="classitk_1_1DefaultDynamicMeshTraits.html">MeshTraits</a>;
<a name="l00073"></a>00073
<a name="l00075"></a>00075 <span class="keyword">typedef</span> <a class="code" href="classitk_1_1Mesh.html" title="Implements the N-dimensional mesh structure.">Mesh</a>< <a class="code" href="classitk_1_1bio_1_1Cell.html" title="This class implement the minimal behavior of a biological cell. The basic behavior...">PointPixelType</a>,
<a name="l00076"></a>00076 NSpaceDimension,
<a name="l00077"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#cc8eda2b4d2252ecdeacf61aed17e609">00077</a> <a class="code" href="classitk_1_1DefaultDynamicMeshTraits.html">MeshTraits</a> > <a class="code" href="classitk_1_1Mesh.html" title="Implements the N-dimensional mesh structure.">MeshType</a>;
<a name="l00078"></a>00078
<a name="l00080"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fc7a45bff9474f87867bfa8446b088eb">00080</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1SmartPointer.html">MeshType::Pointer</a> <a class="code" href="classitk_1_1SmartPointer.html">MeshPointer</a>;
<a name="l00081"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#dacf0672c528bd267213f3d27772bbf5">00081</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1SmartPointer.html">MeshType::ConstPointer</a> <a class="code" href="classitk_1_1SmartPointer.html">MeshConstPointer</a>;
<a name="l00082"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fba57e44b782a57a14c4074c47243ff6">00082</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#ab87c54f2113c452e56f438684ae7238">MeshType::PointType</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fba57e44b782a57a14c4074c47243ff6">PointType</a>;
<a name="l00083"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#ac5089d6d285e54357ba4216f2e9c2bd">00083</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Vector.html">BioCellType::VectorType</a> <a class="code" href="classitk_1_1Vector.html">VectorType</a>;
<a name="l00084"></a>00084
<a name="l00085"></a>00085
<a name="l00086"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#174ca10a93ca97cfa9489b4846590c0d">00086</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#1487108504dfd527a1e058939788c751">MeshType::PointsContainer</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#174ca10a93ca97cfa9489b4846590c0d">PointsContainer</a>;
<a name="l00087"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#d7a917bafc0ec5273ae490fac36b2b2e">00087</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#2e9e368b147eb9b5cb30e7a893cb873c">MeshType::PointDataContainer</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#d7a917bafc0ec5273ae490fac36b2b2e">PointDataContainer</a>;
<a name="l00088"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fbf28ee291afce56aa254e20b2c69742">00088</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#bf231b05468ea1f5fc9ef03af8eaca55">MeshType::CellsContainer</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fbf28ee291afce56aa254e20b2c69742">VoronoiRegionsContainer</a>;
<a name="l00089"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#b21d211f7275273ab8f331d23f926b9e">00089</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> PointsContainer::Iterator <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#b21d211f7275273ab8f331d23f926b9e">PointsIterator</a>;
<a name="l00090"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fd2abdc0fdf19e67bc5557340108a364">00090</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> PointDataContainer::Iterator <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fd2abdc0fdf19e67bc5557340108a364">CellsIterator</a>;
<a name="l00091"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#034bfa2cce6c09a679ea4d218bc32143">00091</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> VoronoiRegionsContainer::Iterator <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#034bfa2cce6c09a679ea4d218bc32143">VoronoiIterator</a>;
<a name="l00092"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#3bb969129fd2be272b79c8ffda5f6f16">00092</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> PointsContainer::ConstIterator <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#3bb969129fd2be272b79c8ffda5f6f16">PointsConstIterator</a>;
<a name="l00093"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#91f544dbf37bb2ff3587add1da2305b4">00093</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> PointDataContainer::ConstIterator <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#91f544dbf37bb2ff3587add1da2305b4">CellsConstIterator</a>;
<a name="l00094"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#8a5f229efc68d4d254e6a4fe5695b703">00094</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> VoronoiRegionsContainer::ConstIterator <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#8a5f229efc68d4d254e6a4fe5695b703">VoronoiConstIterator</a>;
<a name="l00095"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#ecb2c7e265b178c7fc5f9035399d6194">00095</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#ed2fd3a942ea6f1119ade8923c676d39">MeshType::PointIdentifier</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#ecb2c7e265b178c7fc5f9035399d6194">IdentifierType</a>;
<a name="l00096"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#7afcaf08aca6d965aa5bd247a7d55e0f">00096</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#d1909b8733bf192565a263fbedec878d">MeshType::CellAutoPointer</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#7afcaf08aca6d965aa5bd247a7d55e0f">CellAutoPointer</a>;
<a name="l00097"></a>00097
<a name="l00099"></a>00099 <span class="keyword">typedef</span> <a class="code" href="classitk_1_1CellInterface.html">CellInterface</a><
<a name="l00100"></a>00100 <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#d3b778af7f3139bb620bfe7925ec4033">MeshType::CellPixelType</a>,
<a name="l00101"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#766b1813751d9ce519f5c4a406c00a15">00101</a> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Mesh.html#5d92f60ec0c0053a292cd559d9872b12">MeshType::CellTraits</a> > <a class="code" href="classitk_1_1CellInterface.html">CellInterfaceType</a>;
<a name="l00102"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#080d90cceb9fa0ecb721a3d2b8217ad2">00102</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1PolygonCell.html">PolygonCell< CellInterfaceType ></a> <a class="code" href="classitk_1_1PolygonCell.html">VoronoiRegionType</a>;
<a name="l00103"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#097c673053a6fbb9f6af1920c39ada84">00103</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> VoronoiRegionType::SelfAutoPointer <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#097c673053a6fbb9f6af1920c39ada84">VoronoiRegionAutoPointer</a>;
<a name="l00104"></a>00104
<a name="l00106"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#721339c17bf17416771dec6df933d32f">00106</a> <span class="keyword">typedef</span> <span class="keywordtype">float</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#721339c17bf17416771dec6df933d32f">ImagePixelType</a>;
<a name="l00107"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#699f777abb8eef7527f0a44116948076">00107</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1Image.html" title="Templated n-dimensional image class.">Image<ImagePixelType, NSpaceDimension ></a> <a class="code" href="classitk_1_1Image.html" title="Templated n-dimensional image class.">SubstrateType</a>;
<a name="l00108"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#38525ce42a4b9f7a8d03f59c1172b618">00108</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1SmartPointer.html">SubstrateType::Pointer</a> <a class="code" href="classitk_1_1SmartPointer.html">SubstratePointer</a>;
<a name="l00109"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#1e1586d9eb0e0730ba008a07808b2604">00109</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#721339c17bf17416771dec6df933d32f">ImagePixelType</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#1e1586d9eb0e0730ba008a07808b2604">SubstrateValueType</a>;
<a name="l00110"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#4abb37cf89205c101df46a8968e35584">00110</a> <span class="keyword">typedef</span> std::vector< SubstratePointer > <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#4abb37cf89205c101df46a8968e35584">SubstratesVector</a>;
<a name="l00111"></a>00111
<a name="l00112"></a>00112 <span class="keyword">public</span>:
<a name="l00113"></a>00113 <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#98782f30e0b519d4964f07a953e2359a">GetNumberOfCells</a>(<span class="keywordtype">void</span>) <span class="keyword">const</span>;
<a name="l00114"></a>00114
<a name="l00115"></a><a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#2cf5acf6f10df20de0dbf122265c7616">00115</a> <span class="keyword">static</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#2cf5acf6f10df20de0dbf122265c7616">GetDimension</a>() { <span class="keywordflow">return</span> SpaceDimension; }
<a name="l00116"></a>00116
<a name="l00117"></a>00117 <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#ff5b9a9a980932572c9d4eb47dea37ed">SetGrowthRadiusLimit</a>( <span class="keywordtype">double</span> value );
<a name="l00118"></a>00118 <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#20bca6235c23fe9a422bb0d981edac79">SetGrowthRadiusIncrement</a>( <span class="keywordtype">double</span> value );
<a name="l00119"></a>00119
<a name="l00120"></a>00120 <a class="code" href="itkMacro_8h.html#f6bef9ee7e4c077b96a08848ed4e7660">itkGetObjectMacro</a>( <a class="code" href="classitk_1_1Mesh.html" title="Implements the N-dimensional mesh structure.">Mesh</a>, <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#cc8eda2b4d2252ecdeacf61aed17e609">MeshType</a> );
<a name="l00121"></a>00121 <a class="code" href="itkMacro_8h.html#d11f8adb47609be2b4b58948904f8a7c">itkGetConstObjectMacro</a>( <a class="code" href="classitk_1_1Mesh.html" title="Implements the N-dimensional mesh structure.">Mesh</a>, <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#cc8eda2b4d2252ecdeacf61aed17e609">MeshType</a> );
<a name="l00122"></a>00122
<a name="l00123"></a>00123 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#f5a7a489a1e91789c388173c3254e8b8">AdvanceTimeStep</a>(<span class="keywordtype">void</span>);
<a name="l00124"></a>00124
<a name="l00125"></a>00125 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#0910b52e87f580154b28a72a0e652159">SetEgg</a>( <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#90f76b02389ab0c1b60289f0be3e535c">BioCellType</a> * cell, <span class="keyword">const</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fba57e44b782a57a14c4074c47243ff6">PointType</a> & position );
<a name="l00126"></a>00126 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#f9bca6f8dedd00c0dbc40cfb36151005">Add</a>( <a class="code" href="classitk_1_1bio_1_1CellBase.html" title="non-templated Base class from which the templated Cell classes will be derived. Derived...">CellBase</a> * cell );
<a name="l00127"></a>00127 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#f9bca6f8dedd00c0dbc40cfb36151005">Add</a>( <a class="code" href="classitk_1_1bio_1_1CellBase.html" title="non-templated Base class from which the templated Cell classes will be derived. Derived...">CellBase</a> * cell, <span class="keyword">const</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#ac5089d6d285e54357ba4216f2e9c2bd">VectorType</a> & perturbation );
<a name="l00128"></a>00128 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#f9bca6f8dedd00c0dbc40cfb36151005">Add</a>( <a class="code" href="classitk_1_1bio_1_1CellBase.html" title="non-templated Base class from which the templated Cell classes will be derived. Derived...">CellBase</a> * cellA, <a class="code" href="classitk_1_1bio_1_1CellBase.html" title="non-templated Base class from which the templated Cell classes will be derived. Derived...">CellBase</a> * cellB, <span class="keywordtype">double</span> perturbationLength );
<a name="l00129"></a>00129 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#c2b15c8b4c4cf649fcb78adfb9c98865">Remove</a>( <a class="code" href="classitk_1_1bio_1_1CellBase.html" title="non-templated Base class from which the templated Cell classes will be derived. Derived...">CellBase</a> * cell );
<a name="l00130"></a>00130
<a name="l00131"></a>00131 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#39403e0a5a5bae3d108058f86deb6c59">GetVoronoi</a>( <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> <span class="keywordtype">int</span> cellId, <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#097c673053a6fbb9f6af1920c39ada84">VoronoiRegionAutoPointer</a> & ) <span class="keyword">const</span>;
<a name="l00132"></a>00132
<a name="l00133"></a>00133 <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#305f0cb029aa2cba8e8fc815cd860e5d">DumpContent</a>( std::ostream & os ) <span class="keyword">const</span>;
<a name="l00134"></a>00134
<a name="l00135"></a>00135 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#a124e6cf09c67485e94e0ab2a047cdb7">AddSubstrate</a>( <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#699f777abb8eef7527f0a44116948076">SubstrateType</a> * substrate );
<a name="l00136"></a>00136 <span class="keyword">virtual</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#4abb37cf89205c101df46a8968e35584">SubstratesVector</a> & <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#d89c9ad7579b54191cd79558e3949bd4">GetSubstrates</a>( <span class="keywordtype">void</span> );
<a name="l00137"></a>00137 <span class="keyword">virtual</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#1e1586d9eb0e0730ba008a07808b2604">SubstrateValueType</a> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#c6736f4e105040d646e5051919fbecc3">GetSubstrateValue</a>( <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> <span class="keywordtype">int</span> cellId,
<a name="l00138"></a>00138 <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> substrateId ) <span class="keyword">const</span>;
<a name="l00139"></a>00139
<a name="l00140"></a>00140 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#d33c0c47643e12661e7dd4e1af2f2e8d">KillAll</a>(<span class="keywordtype">void</span>);
<a name="l00141"></a>00141
<a name="l00142"></a>00142
<a name="l00143"></a>00143 <span class="keyword">protected</span>:
<a name="l00144"></a>00144 <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#37c0eae5f3cc1689d293c57c4d76b637">CellularAggregate</a>();
<a name="l00145"></a>00145 <span class="keyword">virtual</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#68690c7c9fdd9165c90058a17fbf3d03">~CellularAggregate</a>();
<a name="l00146"></a>00146 <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#37c0eae5f3cc1689d293c57c4d76b637">CellularAggregate</a>( <span class="keyword">const</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#a8c1688c8e4f43efc30157df1bc1d798">Self</a> & );
<a name="l00147"></a>00147 <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#43e8b25d1476fd3c2c6c1d5a103c062e">operator=</a>(<span class="keyword">const</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#a8c1688c8e4f43efc30157df1bc1d798">Self</a>&);
<a name="l00148"></a>00148 <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#9b81ea5e991ecadef74b87265b442399">PrintSelf</a>(std::ostream& os, <a class="code" href="classitk_1_1Indent.html" title="Control indentation during Print() invocation.">Indent</a> indent) <span class="keyword">const</span>;
<a name="l00149"></a>00149
<a name="l00150"></a>00150 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#18e3dba4937e6991391349b7dc9fbe73">ComputeForces</a>(<span class="keywordtype">void</span>);
<a name="l00151"></a>00151 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#e3ae93c48df3caae73564b50dbf91df8">UpdatePositions</a>(<span class="keywordtype">void</span>);
<a name="l00152"></a>00152 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#c4508e474a58ba6e10937568ed4c08c0">ComputeClosestPoints</a>(<span class="keywordtype">void</span>);
<a name="l00153"></a>00153 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#70995f28590907f411cd22a7db537e88">ClearForces</a>(<span class="keywordtype">void</span>);
<a name="l00154"></a>00154
<a name="l00155"></a>00155 <span class="keyword">private</span>:
<a name="l00156"></a>00156
<a name="l00157"></a>00157 <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#fc7a45bff9474f87867bfa8446b088eb">MeshPointer</a> m_Mesh;
<a name="l00158"></a>00158 <a class="code" href="classitk_1_1bio_1_1CellularAggregate.html#4abb37cf89205c101df46a8968e35584">SubstratesVector</a> m_Substrates;
<a name="l00159"></a>00159 <span class="keywordtype">double</span> m_FrictionForce;
<a name="l00160"></a>00160 <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> m_Iteration;
<a name="l00161"></a>00161 <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> m_ClosestPointComputationInterval;
<a name="l00162"></a>00162
<a name="l00163"></a>00163 };
<a name="l00164"></a>00164
<a name="l00165"></a>00165 } <span class="comment">// end namespace bio</span>
<a name="l00166"></a>00166
<a name="l00167"></a>00167 } <span class="comment">// end namespace itk</span>
<a name="l00168"></a>00168
<a name="l00169"></a>00169
<a name="l00170"></a>00170 <span class="preprocessor">#ifndef ITK_MANUAL_INSTANTIATION</span>
<a name="l00171"></a>00171 <span class="preprocessor"></span><span class="preprocessor">#include "itkBioCellularAggregate.txx"</span>
<a name="l00172"></a>00172 <span class="preprocessor">#endif</span>
<a name="l00173"></a>00173 <span class="preprocessor"></span>
<a name="l00174"></a>00174 <span class="preprocessor">#endif</span>
<a name="l00175"></a>00175 <span class="preprocessor"></span>
</pre></div></div>
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