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<h1>itkBloxBoundaryProfileImageToBloxCoreAtomImageFilter.h</h1><a href="itkBloxBoundaryProfileImageToBloxCoreAtomImageFilter_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span>
<a name="l00002"></a>00002 <span class="comment"></span>
<a name="l00003"></a>00003 <span class="comment"> Program: Insight Segmentation & Registration Toolkit</span>
<a name="l00004"></a>00004 <span class="comment"> Module: $RCSfile: itkBloxBoundaryProfileImageToBloxCoreAtomImageFilter.h,v $</span>
<a name="l00005"></a>00005 <span class="comment"> Language: C++</span>
<a name="l00006"></a>00006 <span class="comment"> Date: $Date: 2008-10-09 16:20:18 $</span>
<a name="l00007"></a>00007 <span class="comment"> Version: $Revision: 1.7 $</span>
<a name="l00008"></a>00008 <span class="comment"></span>
<a name="l00009"></a>00009 <span class="comment"> Copyright (c) Insight Software Consortium. All rights reserved.</span>
<a name="l00010"></a>00010 <span class="comment"> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span>
<a name="l00011"></a>00011 <span class="comment"></span>
<a name="l00012"></a>00012 <span class="comment"> This software is distributed WITHOUT ANY WARRANTY; without even</span>
<a name="l00013"></a>00013 <span class="comment"> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR</span>
<a name="l00014"></a>00014 <span class="comment"> PURPOSE. See the above copyright notices for more information.</span>
<a name="l00015"></a>00015 <span class="comment"></span>
<a name="l00016"></a>00016 <span class="comment">=========================================================================*/</span>
<a name="l00017"></a>00017
<a name="l00018"></a>00018 <span class="preprocessor">#ifndef __itkBloxBoundaryProfileImageToBloxCoreAtomImageFilter_h</span>
<a name="l00019"></a>00019 <span class="preprocessor"></span><span class="preprocessor">#define __itkBloxBoundaryProfileImageToBloxCoreAtomImageFilter_h</span>
<a name="l00020"></a>00020 <span class="preprocessor"></span>
<a name="l00021"></a>00021 <span class="preprocessor">#include "<a class="code" href="itkImageToImageFilter_8h.html">itkImageToImageFilter.h</a>"</span>
<a name="l00022"></a>00022 <span class="preprocessor">#include "<a class="code" href="itkPoint_8h.html">itkPoint.h</a>"</span>
<a name="l00023"></a>00023 <span class="preprocessor">#include "<a class="code" href="itkVector_8h.html">itkVector.h</a>"</span>
<a name="l00024"></a>00024 <span class="preprocessor">#include "<a class="code" href="itkCovariantVector_8h.html">itkCovariantVector.h</a>"</span>
<a name="l00025"></a>00025 <span class="preprocessor">#include "<a class="code" href="itkBloxBoundaryProfileItem_8h.html">itkBloxBoundaryProfileItem.h</a>"</span>
<a name="l00026"></a>00026 <span class="preprocessor">#include "<a class="code" href="itkBloxBoundaryProfilePixel_8h.html">itkBloxBoundaryProfilePixel.h</a>"</span>
<a name="l00027"></a>00027 <span class="preprocessor">#include "<a class="code" href="itkBloxBoundaryProfileImage_8h.html">itkBloxBoundaryProfileImage.h</a>"</span>
<a name="l00028"></a>00028 <span class="preprocessor">#include "<a class="code" href="itkBloxCoreAtomItem_8h.html">itkBloxCoreAtomItem.h</a>"</span>
<a name="l00029"></a>00029 <span class="preprocessor">#include "<a class="code" href="itkBloxCoreAtomPixel_8h.html">itkBloxCoreAtomPixel.h</a>"</span>
<a name="l00030"></a>00030 <span class="preprocessor">#include "<a class="code" href="itkBloxCoreAtomImage_8h.html">itkBloxCoreAtomImage.h</a>"</span>
<a name="l00031"></a>00031
<a name="l00032"></a>00032 <span class="keyword">namespace </span>itk
<a name="l00033"></a>00033 {
<a name="l00034"></a>00034
<a name="l00038"></a>00038 <span class="keyword">template</span>< <span class="keyword">typename</span> TInputImage, <span class="keyword">typename</span> TOutputImage, <span class="keyword">typename</span> TSourceImage >
<a name="l00039"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html">00039</a> <span class="keyword">class </span><a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html" title="Converts a blox boundary profile image to an image of core atoms.">BloxBoundaryProfileImageToBloxCoreAtomImageFilter</a> :
<a name="l00040"></a>00040 <span class="keyword">public</span> <a class="code" href="classitk_1_1ImageToImageFilter.html" title="Base class for filters that take an image as input and produce an image as output...">ImageToImageFilter</a>< TInputImage, TOutputImage >
<a name="l00041"></a>00041 {
<a name="l00042"></a>00042 <span class="keyword">public</span>:
<a name="l00044"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#6377b55cdcb6b344e9be3d79a40c97f0">00044</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html" title="Converts a blox boundary profile image to an image of core atoms.">BloxBoundaryProfileImageToBloxCoreAtomImageFilter</a> <a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html" title="Converts a blox boundary profile image to an image of core atoms.">Self</a>;
<a name="l00045"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#96b624f1e8e55e2d40bb445ddcfa4025">00045</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1ImageToImageFilter.html">ImageToImageFilter<TInputImage, TOutputImage></a> <a class="code" href="classitk_1_1ImageToImageFilter.html">Superclass</a>;
<a name="l00046"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#234d1225796ff28ef49eac60463054e9">00046</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<Self></a> <a class="code" href="classitk_1_1SmartPointer.html">Pointer</a>;
<a name="l00047"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#6e78133f0d6f7c8249fe6be244e49f64">00047</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<const Self></a> <a class="code" href="classitk_1_1SmartPointer.html">ConstPointer</a>;
<a name="l00048"></a>00048
<a name="l00050"></a>00050 <a class="code" href="itkMacro_8h.html#0fdc15685afa271857c57e7cd482f30c">itkNewMacro</a>(<a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html" title="Converts a blox boundary profile image to an image of core atoms.">Self</a>);
<a name="l00051"></a>00051
<a name="l00053"></a>00053 <a class="code" href="itkMacro_8h.html#574c1f86661d409dd32c742307a0e96a">itkTypeMacro</a>( <a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html" title="Converts a blox boundary profile image to an image of core atoms.">BloxBoundaryProfileImageToBloxCoreAtomImageFilter</a>, <a class="code" href="classitk_1_1ImageToImageFilter.html" title="Base class for filters that take an image as input and produce an image as output...">ImageToImageFilter</a> );
<a name="l00054"></a>00054
<a name="l00056"></a>00056 <a class="code" href="itkMacro_8h.html#1905cf6b2e88235996fa7ff73b2fb0eb">itkStaticConstMacro</a>(NDimensions, <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>, TSourceImage::ImageDimension);
<a name="l00057"></a>00057
<a name="l00059"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#e842ce2633d797967b24f93b33563bb6">00059</a> <span class="keyword">typedef</span> TInputImage <a class="code" href="namespaceHardConnectedComponentImageFilter.html#3742cbac150bee74daa9aab85ed80623">InputImageType</a>;
<a name="l00060"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#a33b8e4107bfd308dedbb649876ee8fd">00060</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#539cce1a3282ba59952dedcbf9cdb23f">InputImageType::Pointer</a> InputImagePointer;
<a name="l00061"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#0724cd02d46ddb95149de8be6278a78f">00061</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ed8c4a40607d317c666eb96ea265e126">InputImageType::RegionType</a> InputImageRegionType;
<a name="l00062"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#7fd84e0149d661afdaa3ed31d4e59ee5">00062</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> InputImageType::PixelType InputImagePixelType;
<a name="l00063"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#36039e8baf97673697068a6d5b2c155e">00063</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#68fafcc6909430ccd70cbc4aeee0107c">InputImageType::ConstPointer</a> InputImageConstPointer;
<a name="l00064"></a>00064
<a name="l00065"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#34b55b5503593ec39c9b50aa8bbc7c54">00065</a> <span class="keyword">typedef</span> TOutputImage <a class="code" href="namespaceHardConnectedComponentImageFilter.html#386ea018cab3835dcdff2603f4d2280e">OutputImageType</a>;
<a name="l00066"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#4cd52cd6a090f433fa7fd42fb8bc432d">00066</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#539cce1a3282ba59952dedcbf9cdb23f">OutputImageType::Pointer</a> OutputImagePointer;
<a name="l00067"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#49d4faf4d3acd0930a8913a0303bcf6c">00067</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ed8c4a40607d317c666eb96ea265e126">OutputImageType::RegionType</a> OutputImageRegionType;
<a name="l00068"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#85f96f5cb10cd03fffbe5965660bc102">00068</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> OutputImageType::PixelType OutputImagePixelType;
<a name="l00069"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#fff35078fa96b7dd69077e157989ac9c">00069</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#68fafcc6909430ccd70cbc4aeee0107c">OutputImageType::ConstPointer</a> OutputImageConstPointer;
<a name="l00070"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#d2d5a0077d59425c0297bc05acc3f816">00070</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">OutputImageType::IndexType</a> OutputImageIndexType;
<a name="l00071"></a>00071
<a name="l00072"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#929e6e909f6ff4a23b75eb642c22ad92">00072</a> <span class="keyword">typedef</span> TSourceImage SourceImageType;
<a name="l00073"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#dee6ce2611ecf206e74dc694c5d980a9">00073</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#539cce1a3282ba59952dedcbf9cdb23f">SourceImageType::Pointer</a> SourceImagePointer;
<a name="l00074"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#ed5a32adb255c9d3a4a051162558ad1a">00074</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ed8c4a40607d317c666eb96ea265e126">SourceImageType::RegionType</a> SourceImageRegionType;
<a name="l00075"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#77b19a20bec1c9ef91763351c25093ba">00075</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> SourceImageType::PixelType SourceImagePixelType;
<a name="l00076"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#a00944e6490ed7ae7d2d4ce433dab23d">00076</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#68fafcc6909430ccd70cbc4aeee0107c">SourceImageType::ConstPointer</a> SourceImageConstPointer;
<a name="l00077"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#26ccd0385f9b26b1125123ed5b5c0e9e">00077</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">SourceImageType::IndexType</a> SourceImageIndexType;
<a name="l00078"></a>00078
<a name="l00080"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#87259486e097560a5b9cab7be368023e">00080</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1Size.html" title="Represent the size (bounds) of a n-dimensional image.">Size<itkGetStaticConstMacro(NDimensions)></a> <a class="code" href="classitk_1_1Size.html" title="Represent the size (bounds) of a n-dimensional image.">SizeType</a>;
<a name="l00081"></a>00081
<a name="l00083"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#4e85f4c3f265d1aaff06f6b9ff89e534">00083</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1Point.html" title="A templated class holding a geometric point in n-Dimensional space.">Point<double, itkGetStaticConstMacro(NDimensions)></a> <a class="code" href="classitk_1_1Point.html" title="A templated class holding a geometric point in n-Dimensional space.">PositionType</a>;
<a name="l00084"></a>00084
<a name="l00086"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#a5c606063d78b3ffb499f78a5d943e06">00086</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="classitk_1_1Vector.html" title="A templated class holding a n-Dimensional vector.">PositionType::VectorType</a> <a class="code" href="classitk_1_1Vector.html" title="A templated class holding a n-Dimensional vector.">VectorType</a>;
<a name="l00087"></a>00087
<a name="l00089"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#2b7654dcbee39aa5b1af1395cf12933f">00089</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1CovariantVector.html" title="A templated class holding a n-Dimensional covariant vector.">CovariantVector<double, itkGetStaticConstMacro(NDimensions)></a> <a class="code" href="classitk_1_1CovariantVector.html" title="A templated class holding a n-Dimensional covariant vector.">GradientType</a>;
<a name="l00090"></a>00090
<a name="l00092"></a>00092 <span class="keywordtype">void</span> FindCoreAtoms();
<a name="l00093"></a>00093
<a name="l00095"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#e763201512a731890744c9fbd03e2c68">00095</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1BloxBoundaryProfileItem.html">BloxBoundaryProfileItem<itkGetStaticConstMacro(NDimensions)></a> <a class="code" href="classitk_1_1BloxBoundaryProfileItem.html">BloxProfileItemType</a>;
<a name="l00096"></a>00096 <span class="keywordtype">void</span> FindCoreAtomsAtBoundaryPoint(<a class="code" href="classitk_1_1BloxBoundaryProfileItem.html">BloxProfileItemType</a>* pItem);
<a name="l00098"></a>00098
<a name="l00100"></a>00100 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(DistanceMin, <span class="keywordtype">double</span>);
<a name="l00101"></a>00101 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(DistanceMax, <span class="keywordtype">double</span>);
<a name="l00102"></a>00102 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(Epsilon, <span class="keywordtype">double</span>);
<a name="l00103"></a>00103 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(Polarity, <span class="keywordtype">bool</span>);
<a name="l00105"></a>00105
<a name="l00107"></a>00107 <span class="keywordtype">void</span> GenerateInputRequestedRegion();
<a name="l00108"></a>00108
<a name="l00110"></a>00110 <span class="keywordtype">void</span> SetInput1(<span class="keyword">const</span> SourceImageType * image1);
<a name="l00111"></a>00111 <span class="keywordtype">void</span> SetInput2(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#3742cbac150bee74daa9aab85ed80623">InputImageType</a> * image2);
<a name="l00113"></a>00113
<a name="l00114"></a>00114 <span class="keyword">protected</span>:
<a name="l00115"></a>00115 <a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html" title="Converts a blox boundary profile image to an image of core atoms.">BloxBoundaryProfileImageToBloxCoreAtomImageFilter</a>();
<a name="l00116"></a><a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#ab85eaa8e3a477c31e6c72e61bdad460">00116</a> <span class="keyword">virtual</span> <a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html#ab85eaa8e3a477c31e6c72e61bdad460">~BloxBoundaryProfileImageToBloxCoreAtomImageFilter</a>() {};
<a name="l00117"></a>00117 <span class="keywordtype">void</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#920ae03048a5ad715d803ca2e92b52de">PrintSelf</a>(std::ostream& os, <a class="code" href="classitk_1_1Indent.html" title="Control indentation during Print() invocation.">Indent</a> indent) <span class="keyword">const</span>;
<a name="l00118"></a>00118
<a name="l00120"></a>00120 <span class="keywordtype">void</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#f75a5945cdd8315676941024a0b8c1e9">GenerateData</a>();
<a name="l00121"></a>00121
<a name="l00122"></a>00122 <span class="keyword">private</span>:
<a name="l00123"></a>00123 <a class="code" href="classitk_1_1BloxBoundaryProfileImageToBloxCoreAtomImageFilter.html" title="Converts a blox boundary profile image to an image of core atoms.">BloxBoundaryProfileImageToBloxCoreAtomImageFilter</a>(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ac7d0120fe5292cdcdddb6163b8cb150">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00124"></a>00124 <span class="keywordtype">void</span> operator=(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ac7d0120fe5292cdcdddb6163b8cb150">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00125"></a>00125
<a name="l00127"></a>00127 InputImageConstPointer m_BoundaryProfileImagePtr;
<a name="l00128"></a>00128 OutputImagePointer m_OutputPtr;
<a name="l00129"></a>00129 SourceImageConstPointer m_SourceImagePtr;
<a name="l00130"></a>00130
<a name="l00134"></a>00134 <span class="keywordtype">double</span> m_DistanceMin;
<a name="l00135"></a>00135 <span class="keywordtype">double</span> m_DistanceMax;
<a name="l00136"></a>00136 <span class="keywordtype">double</span> m_Epsilon;
<a name="l00137"></a>00137 <span class="keywordtype">bool</span> m_Polarity;
<a name="l00138"></a>00138 <span class="keywordtype">bool</span> m_IntensityFlag;
<a name="l00139"></a>00139 <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> m_IntensityThreshold;
<a name="l00140"></a>00140 <span class="keywordtype">bool</span> m_CreateCoreAtom;
<a name="l00141"></a>00141 <span class="keywordtype">int</span> m_CoreAtomsCreated;
<a name="l00142"></a>00142 };
<a name="l00143"></a>00143
<a name="l00144"></a>00144 } <span class="comment">// end namespace itk</span>
<a name="l00145"></a>00145
<a name="l00146"></a>00146 <span class="preprocessor">#ifndef ITK_MANUAL_INSTANTIATION</span>
<a name="l00147"></a>00147 <span class="preprocessor"></span><span class="preprocessor">#include "itkBloxBoundaryProfileImageToBloxCoreAtomImageFilter.txx"</span>
<a name="l00148"></a>00148 <span class="preprocessor">#endif</span>
<a name="l00149"></a>00149 <span class="preprocessor"></span>
<a name="l00150"></a>00150 <span class="preprocessor">#endif</span>
<a name="l00151"></a>00151 <span class="preprocessor"></span>
</pre></div></div>
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