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<h1>itkBloxCoreAtomPixel.h</h1><a href="itkBloxCoreAtomPixel_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span>
<a name="l00002"></a>00002 <span class="comment"></span>
<a name="l00003"></a>00003 <span class="comment">Program: Insight Segmentation & Registration Toolkit</span>
<a name="l00004"></a>00004 <span class="comment">Module: $RCSfile: itkBloxCoreAtomPixel.h,v $</span>
<a name="l00005"></a>00005 <span class="comment">Language: C++</span>
<a name="l00006"></a>00006 <span class="comment">Date: $Date: 2007-04-06 12:50:58 $</span>
<a name="l00007"></a>00007 <span class="comment">Version: $Revision: 1.24 $</span>
<a name="l00008"></a>00008 <span class="comment"></span>
<a name="l00009"></a>00009 <span class="comment">Copyright (c) Insight Software Consortium. All rights reserved.</span>
<a name="l00010"></a>00010 <span class="comment">See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span>
<a name="l00011"></a>00011 <span class="comment"></span>
<a name="l00012"></a>00012 <span class="comment">This software is distributed WITHOUT ANY WARRANTY; without even</span>
<a name="l00013"></a>00013 <span class="comment">the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR</span>
<a name="l00014"></a>00014 <span class="comment">PURPOSE. See the above copyright notices for more information.</span>
<a name="l00015"></a>00015 <span class="comment"></span>
<a name="l00016"></a>00016 <span class="comment">=========================================================================*/</span>
<a name="l00017"></a>00017 <span class="preprocessor">#ifndef __itkBloxCoreAtomPixel_h</span>
<a name="l00018"></a>00018 <span class="preprocessor"></span><span class="preprocessor">#define __itkBloxCoreAtomPixel_h</span>
<a name="l00019"></a>00019 <span class="preprocessor"></span>
<a name="l00020"></a>00020 <span class="preprocessor">#include "vnl/vnl_matrix_fixed.h"</span>
<a name="l00021"></a>00021 <span class="preprocessor">#include "vnl/vnl_vector_fixed.h"</span>
<a name="l00022"></a>00022 <span class="preprocessor">#include "vnl/algo/vnl_generalized_eigensystem.h"</span>
<a name="l00023"></a>00023
<a name="l00024"></a>00024 <span class="preprocessor">#include "<a class="code" href="itkObject_8h.html">itkObject.h</a>"</span>
<a name="l00025"></a>00025 <span class="preprocessor">#include "<a class="code" href="itkBloxCoreAtomItem_8h.html">itkBloxCoreAtomItem.h</a>"</span>
<a name="l00026"></a>00026 <span class="preprocessor">#include "<a class="code" href="itkBloxBoundaryPointItem_8h.html">itkBloxBoundaryPointItem.h</a>"</span>
<a name="l00027"></a>00027 <span class="preprocessor">#include "<a class="code" href="itkPoint_8h.html">itkPoint.h</a>"</span>
<a name="l00028"></a>00028 <span class="preprocessor">#include "<a class="code" href="itkCovariantVector_8h.html">itkCovariantVector.h</a>"</span>
<a name="l00029"></a>00029 <span class="preprocessor">#include "<a class="code" href="itkBloxPixel_8h.html">itkBloxPixel.h</a>"</span>
<a name="l00030"></a>00030
<a name="l00031"></a>00031 <span class="keyword">namespace </span>itk
<a name="l00032"></a>00032 {
<a name="l00033"></a>00033
<a name="l00041"></a>00041 <span class="keyword">template</span> <<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> NDimensions>
<a name="l00042"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html">00042</a> <span class="keyword">class </span><a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="classitk_1_1BloxCoreAtomPixel.html" title="Holds a linked list of itk::BloxCoreAtomItem&#39;s.">BloxCoreAtomPixel</a> : <span class="keyword">public</span> <a class="code" href="classitk_1_1BloxPixel.html" title="Holds a linked list of BloxItem&#39;s.">BloxPixel</a><
<a name="l00043"></a>00043 BloxCoreAtomItem<NDimensions> >
<a name="l00044"></a>00044 {
<a name="l00045"></a>00045 <span class="keyword">public</span>:
<a name="l00046"></a>00046
<a name="l00048"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#6cd4e59b71ea9fc2e312bf1167ae37ca">00048</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1BloxCoreAtomPixel.html" title="Holds a linked list of itk::BloxCoreAtomItem&#39;s.">BloxCoreAtomPixel</a> <a class="code" href="classitk_1_1BloxCoreAtomPixel.html" title="Holds a linked list of itk::BloxCoreAtomItem&#39;s.">Self</a>;
<a name="l00049"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#c11eec9610010b4f54758887f404c67d">00049</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1BloxPixel.html" title="Holds a linked list of BloxItem&#39;s.">BloxPixel< BloxCoreAtomItem<NDimensions></a> > <a class="code" href="classitk_1_1BloxPixel.html">Superclass</a>;
<a name="l00050"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#76cd1cb7abd2df066cb8e963661bc916">00050</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<Self></a> <a class="code" href="classitk_1_1SmartPointer.html">Pointer</a>;
<a name="l00051"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#4fe17af61e2a6f006775661b530a8584">00051</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<const Self></a> <a class="code" href="classitk_1_1SmartPointer.html">ConstPointer</a>;
<a name="l00052"></a>00052
<a name="l00054"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#6232830a1014bd0971ace9b167650eaa">00054</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1BloxCoreAtomItem.html" title="A core atom object, stored in a BloxPixel.">BloxCoreAtomItem<NDimensions></a> <a class="code" href="classitk_1_1BloxCoreAtomItem.html" title="A core atom object, stored in a BloxPixel.">CoreAtomItemType</a>;
<a name="l00055"></a>00055
<a name="l00057"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#e7f943ae0dbbb7719dd85bbc00fcb6be">00057</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1BloxBoundaryPointItem.html" title="A boundary point, stored in a BloxPixel.">BloxBoundaryPointItem<NDimensions></a> <a class="code" href="classitk_1_1BloxBoundaryPointItem.html" title="A boundary point, stored in a BloxPixel.">BPItemType</a>;
<a name="l00058"></a>00058
<a name="l00060"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#47038da286efa27e7f7e04c3fad65110">00060</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1Point.html">Point<double, NDimensions></a> <a class="code" href="classitk_1_1Point.html">PositionType</a>;
<a name="l00061"></a>00061
<a name="l00063"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#bfc1fc2bdea6387a3f24a590b373d99b">00063</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1CovariantVector.html" title="A templated class holding a n-Dimensional covariant vector.">CovariantVector<double, NDimensions></a> <a class="code" href="classitk_1_1CovariantVector.html" title="A templated class holding a n-Dimensional covariant vector.">GradientType</a>;
<a name="l00064"></a>00064
<a name="l00066"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#0642fc1d8f6acfc99158097cc6426566">00066</a> <span class="keyword">typedef</span> vnl_vector_fixed<double, NDimensions> VectorType;
<a name="l00067"></a>00067
<a name="l00069"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#b7bad2ad7f172f38197bc8427b79a7c8">00069</a> <span class="keyword">typedef</span> vnl_vector_fixed<double, NDimensions> EigenvalueType;
<a name="l00070"></a>00070
<a name="l00072"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#f40c2ec718d22672be0470e61238f720">00072</a> <span class="keyword">typedef</span> vnl_matrix_fixed<double, NDimensions, NDimensions> EigenvectorType;
<a name="l00073"></a>00073
<a name="l00075"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#44c310c037ae622cf78c31bc9a647458">00075</a> <span class="keyword">typedef</span> vnl_matrix_fixed<double, NDimensions, NDimensions> MatrixType;
<a name="l00076"></a>00076
<a name="l00078"></a>00078 <span class="keywordtype">double</span> CalcMeanCoreAtomDiameter();
<a name="l00079"></a>00079
<a name="l00082"></a>00082 <span class="keywordtype">bool</span> DoCoreAtomEigenanalysis();
<a name="l00083"></a>00083
<a name="l00085"></a>00085 <span class="keywordtype">void</span> DoVotedEigenanalysis();
<a name="l00086"></a>00086
<a name="l00088"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#53f9fc9b775d28a87e833dbc229882f6">00088</a> <span class="keywordtype">double</span> <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#53f9fc9b775d28a87e833dbc229882f6">GetMeanCoreAtomDiameter</a>() {<span class="keywordflow">return</span> m_MeanCoreAtomDiameter;}
<a name="l00089"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#9757e23f875c390e0a1ba129c75e9b32">00089</a> <span class="keywordtype">double</span> <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#9757e23f875c390e0a1ba129c75e9b32">GetMeanCoreAtomIntensity</a>() {<span class="keywordflow">return</span> m_MeanCoreAtomIntensity;}
<a name="l00090"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#ea1aa8552906b66d7be841ec949deba8">00090</a> EigenvalueType <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#ea1aa8552906b66d7be841ec949deba8">GetEigenvalues</a>() {<span class="keywordflow">return</span> m_Eigenvalues;}
<a name="l00091"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#bdca070f235e72a2830402ff7bfb8c5b">00091</a> EigenvalueType <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#bdca070f235e72a2830402ff7bfb8c5b">GetVotedEigenvalues</a>() {<span class="keywordflow">return</span> m_VotedEigenvalues;}
<a name="l00092"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#e993d1eee785e9ee89ca7fb03d108f8b">00092</a> EigenvectorType <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#e993d1eee785e9ee89ca7fb03d108f8b">GetEigenvectors</a>() {<span class="keywordflow">return</span> m_Eigenvectors;}
<a name="l00093"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#0265a4164fb0a74497afb1ef2239e195">00093</a> EigenvectorType <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#0265a4164fb0a74497afb1ef2239e195">GetVotedEigenvectors</a>() {<span class="keywordflow">return</span> m_VotedEigenvectors;}
<a name="l00094"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#95ba7378c61e84d293a0c98a509e9c0f">00094</a> <a class="code" href="classitk_1_1Point.html">PositionType</a> <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#95ba7378c61e84d293a0c98a509e9c0f">GetLocationSums</a>() {<span class="keywordflow">return</span> m_LocationSums;}
<a name="l00095"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#c03155efc7baa4b29835d242b73edb9f">00095</a> <span class="keywordtype">double</span> <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#c03155efc7baa4b29835d242b73edb9f">GetWeightSum</a>() {<span class="keywordflow">return</span> m_WeightSum;}
<a name="l00097"></a>00097
<a name="l00099"></a><a class="code" href="classitk_1_1BloxCoreAtomPixel.html#48ba77a783e7549978219a320a0605a7">00099</a> MatrixType* <a class="code" href="classitk_1_1BloxCoreAtomPixel.html#48ba77a783e7549978219a320a0605a7">GetRawCMatrixPointer</a>() {<span class="keywordflow">return</span> &m_RawCMatrix;}
<a name="l00100"></a>00100
<a name="l00102"></a>00102 <span class="keywordtype">void</span> CollectVote(MatrixType* pMatrix, <span class="keywordtype">double</span> strength, <span class="keywordtype">double</span> count);
<a name="l00103"></a>00103
<a name="l00105"></a>00105 <span class="keywordtype">void</span> NormalizeVotedCMatrix();
<a name="l00106"></a>00106
<a name="l00110"></a>00110 <span class="keywordtype">void</span> CalcWeightedCoreAtomLocation(<span class="keywordtype">double</span> weight_factor, <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ac7d0120fe5292cdcdddb6163b8cb150">Self</a> * votingPixel);
<a name="l00111"></a>00111
<a name="l00113"></a>00113 <span class="keywordtype">void</span> CalcMeanCoreAtomIntensity();
<a name="l00114"></a>00114
<a name="l00116"></a>00116 PositionType GetVotedLocation();
<a name="l00117"></a>00117
<a name="l00118"></a>00118 <a class="code" href="classitk_1_1BloxCoreAtomPixel.html" title="Holds a linked list of itk::BloxCoreAtomItem&#39;s.">BloxCoreAtomPixel</a>();
<a name="l00119"></a>00119 ~<a class="code" href="classitk_1_1BloxCoreAtomPixel.html" title="Holds a linked list of itk::BloxCoreAtomItem&#39;s.">BloxCoreAtomPixel</a>();
<a name="l00120"></a>00120
<a name="l00121"></a>00121 <span class="keyword">private</span>:
<a name="l00122"></a>00122
<a name="l00124"></a>00124 <span class="keywordtype">double</span> m_MeanCoreAtomDiameter;
<a name="l00125"></a>00125
<a name="l00127"></a>00127 MatrixType m_RawCMatrix;
<a name="l00128"></a>00128
<a name="l00132"></a>00132 EigenvalueType m_Eigenvalues;
<a name="l00133"></a>00133
<a name="l00136"></a>00136 EigenvectorType m_Eigenvectors;
<a name="l00137"></a>00137
<a name="l00139"></a>00139 MatrixType m_VotedCMatrix;
<a name="l00140"></a>00140
<a name="l00142"></a>00142 EigenvalueType m_VotedEigenvalues;
<a name="l00143"></a>00143
<a name="l00145"></a>00145 EigenvectorType m_VotedEigenvectors;
<a name="l00146"></a>00146
<a name="l00149"></a>00149 <span class="keywordtype">double</span> m_ConstituencySize;
<a name="l00150"></a>00150
<a name="l00152"></a>00152 PositionType m_LocationSums;
<a name="l00153"></a>00153
<a name="l00155"></a>00155 PositionType m_VotedLocation;
<a name="l00156"></a>00156
<a name="l00158"></a>00158 <span class="keywordtype">double</span> m_WeightSum;
<a name="l00159"></a>00159
<a name="l00161"></a>00161 <span class="keywordtype">double</span> m_MeanCoreAtomIntensity;
<a name="l00162"></a>00162 };
<a name="l00163"></a>00163
<a name="l00164"></a>00164
<a name="l00165"></a>00165 } <span class="comment">// end namespace itk</span>
<a name="l00166"></a>00166
<a name="l00167"></a>00167 <span class="comment">// Define instantiation macro for this template.</span>
<a name="l00168"></a><a class="code" href="itkBloxCoreAtomPixel_8h.html#cdce1df4e97bbeabee253c7b3b493917">00168</a> <span class="preprocessor">#define ITK_TEMPLATE_BloxCoreAtomPixel(_, EXPORT, x, y) namespace itk { \</span>
<a name="l00169"></a>00169 <span class="preprocessor"> _(1(class EXPORT BloxCoreAtomPixel< ITK_TEMPLATE_1 x >)) \</span>
<a name="l00170"></a>00170 <span class="preprocessor"> namespace Templates { typedef BloxCoreAtomPixel< ITK_TEMPLATE_1 x > \</span>
<a name="l00171"></a>00171 <span class="preprocessor"> BloxCoreAtomPixel##y; } \</span>
<a name="l00172"></a>00172 <span class="preprocessor"> }</span>
<a name="l00173"></a>00173 <span class="preprocessor"></span>
<a name="l00174"></a>00174 <span class="preprocessor">#if ITK_TEMPLATE_EXPLICIT</span>
<a name="l00175"></a>00175 <span class="preprocessor"></span><span class="preprocessor"># include "Templates/itkBloxCoreAtomPixel+-.h"</span>
<a name="l00176"></a>00176 <span class="preprocessor">#endif</span>
<a name="l00177"></a>00177 <span class="preprocessor"></span>
<a name="l00178"></a>00178 <span class="preprocessor">#if ITK_TEMPLATE_TXX</span>
<a name="l00179"></a>00179 <span class="preprocessor"></span><span class="preprocessor"># include "itkBloxCoreAtomPixel.txx"</span>
<a name="l00180"></a>00180 <span class="preprocessor">#endif</span>
<a name="l00181"></a>00181 <span class="preprocessor"></span>
<a name="l00182"></a>00182 <span class="preprocessor">#endif</span>
<a name="l00183"></a>00183 <span class="preprocessor"></span>
</pre></div></div>
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