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<h1>itkGDCMImageIO.h</h1><a href="itkGDCMImageIO_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span>
<a name="l00002"></a>00002 <span class="comment"></span>
<a name="l00003"></a>00003 <span class="comment"> Program: Insight Segmentation & Registration Toolkit</span>
<a name="l00004"></a>00004 <span class="comment"> Module: $RCSfile: itkGDCMImageIO.h,v $</span>
<a name="l00005"></a>00005 <span class="comment"> Language: C++</span>
<a name="l00006"></a>00006 <span class="comment"> Date: $Date: 2008-11-25 13:32:34 $</span>
<a name="l00007"></a>00007 <span class="comment"> Version: $Revision: 1.36 $</span>
<a name="l00008"></a>00008 <span class="comment"></span>
<a name="l00009"></a>00009 <span class="comment"> Copyright (c) Insight Software Consortium. All rights reserved.</span>
<a name="l00010"></a>00010 <span class="comment"> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span>
<a name="l00011"></a>00011 <span class="comment"></span>
<a name="l00012"></a>00012 <span class="comment"> Portions of this code are covered under the VTK copyright.</span>
<a name="l00013"></a>00013 <span class="comment"> See VTKCopyright.txt or http://www.kitware.com/VTKCopyright.htm for details.</span>
<a name="l00014"></a>00014 <span class="comment"></span>
<a name="l00015"></a>00015 <span class="comment"> This software is distributed WITHOUT ANY WARRANTY; without even </span>
<a name="l00016"></a>00016 <span class="comment"> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR </span>
<a name="l00017"></a>00017 <span class="comment"> PURPOSE. See the above copyright notices for more information.</span>
<a name="l00018"></a>00018 <span class="comment"></span>
<a name="l00019"></a>00019 <span class="comment">=========================================================================*/</span>
<a name="l00020"></a>00020 <span class="preprocessor">#ifndef __itkGDCMImageIO_h</span>
<a name="l00021"></a>00021 <span class="preprocessor"></span><span class="preprocessor">#define __itkGDCMImageIO_h</span>
<a name="l00022"></a>00022 <span class="preprocessor"></span>
<a name="l00023"></a>00023 <span class="preprocessor">#include "<a class="code" href="itkImageIOBase_8h.html">itkImageIOBase.h</a>"</span>
<a name="l00024"></a>00024 <span class="preprocessor">#include <fstream></span>
<a name="l00025"></a>00025 <span class="preprocessor">#include <string></span>
<a name="l00026"></a>00026
<a name="l00027"></a>00027 <span class="keyword">namespace </span>itk
<a name="l00028"></a>00028 {
<a name="l00029"></a>00029
<a name="l00057"></a>00057 <span class="keyword">class </span>InternalHeader;
<a name="l00058"></a><a class="code" href="classitk_1_1GDCMImageIO.html">00058</a> <span class="keyword">class </span><a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="classitk_1_1GDCMImageIO.html" title="ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA (V1.0 &amp; V2.0) images...">GDCMImageIO</a> : <span class="keyword">public</span> <a class="code" href="classitk_1_1ImageIOBase.html" title="Abstract superclass defines image IO interface.">ImageIOBase</a>
<a name="l00059"></a>00059 {
<a name="l00060"></a>00060 <span class="keyword">public</span>:
<a name="l00062"></a><a class="code" href="classitk_1_1GDCMImageIO.html#6f24e74e648c559a0f40d18f6a0d8a4c">00062</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1GDCMImageIO.html" title="ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA (V1.0 &amp; V2.0) images...">GDCMImageIO</a> <a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>;
<a name="l00063"></a><a class="code" href="classitk_1_1GDCMImageIO.html#77a2b12cf67a9b4d29116a35c4e2d85d">00063</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1ImageIOBase.html" title="Abstract superclass defines image IO interface.">ImageIOBase</a> <a class="code" href="classitk_1_1Object.html" title="Base class for most itk classes.">Superclass</a>;
<a name="l00064"></a><a class="code" href="classitk_1_1GDCMImageIO.html#8503d8a3683dcbab7c5145d0a30090b6">00064</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<Self></a> <a class="code" href="classitk_1_1SmartPointer.html">Pointer</a>;
<a name="l00065"></a>00065
<a name="l00067"></a>00067 <a class="code" href="itkMacro_8h.html#0fdc15685afa271857c57e7cd482f30c">itkNewMacro</a>(<a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>);
<a name="l00068"></a>00068
<a name="l00070"></a>00070 <a class="code" href="itkMacro_8h.html#574c1f86661d409dd32c742307a0e96a">itkTypeMacro</a>(<a class="code" href="classitk_1_1GDCMImageIO.html" title="ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA (V1.0 &amp; V2.0) images...">GDCMImageIO</a>, <a class="code" href="classitk_1_1Object.html" title="Base class for most itk classes.">Superclass</a>);
<a name="l00071"></a>00071
<a name="l00072"></a>00072 <span class="comment">/*-------- This part of the interface deals with reading data. ------ */</span>
<a name="l00073"></a>00073
<a name="l00076"></a>00076 <span class="keyword">virtual</span> <span class="keywordtype">bool</span> CanReadFile(<span class="keyword">const</span> <span class="keywordtype">char</span>*);
<a name="l00077"></a>00077
<a name="l00079"></a>00079 <span class="keyword">virtual</span> <span class="keywordtype">void</span> ReadImageInformation();
<a name="l00080"></a>00080
<a name="l00082"></a>00082 <span class="keyword">virtual</span> <span class="keywordtype">void</span> Read(<span class="keywordtype">void</span>* buffer);
<a name="l00083"></a>00083
<a name="l00084"></a>00084 <span class="comment">/*-------- This part of the interfaces deals with writing data. ----- */</span>
<a name="l00085"></a>00085
<a name="l00088"></a>00088 <span class="keyword">virtual</span> <span class="keywordtype">bool</span> CanWriteFile(<span class="keyword">const</span> <span class="keywordtype">char</span>*);
<a name="l00089"></a>00089
<a name="l00092"></a>00092 <span class="keyword">virtual</span> <span class="keywordtype">void</span> WriteImageInformation();
<a name="l00093"></a>00093
<a name="l00096"></a>00096 <span class="keyword">virtual</span> <span class="keywordtype">void</span> Write(<span class="keyword">const</span> <span class="keywordtype">void</span>* buffer);
<a name="l00097"></a>00097
<a name="l00101"></a>00101 <a class="code" href="itkMacro_8h.html#1600305bb01e39e87c472d8bf29bd1cf">itkGetMacro</a>(RescaleSlope, <span class="keywordtype">double</span>);
<a name="l00102"></a>00102 <a class="code" href="itkMacro_8h.html#1600305bb01e39e87c472d8bf29bd1cf">itkGetMacro</a>(RescaleIntercept, <span class="keywordtype">double</span>);
<a name="l00104"></a>00104
<a name="l00109"></a>00109 <a class="code" href="itkMacro_8h.html#bea8d1eeb8af8f01bfec0169f63f6871">itkGetStringMacro</a>(UIDPrefix);
<a name="l00110"></a>00110 <a class="code" href="itkMacro_8h.html#3b9c68842cd296d3ef6d1ed0f5a742a4">itkSetStringMacro</a>(UIDPrefix);
<a name="l00112"></a>00112
<a name="l00114"></a>00114 <a class="code" href="itkMacro_8h.html#bea8d1eeb8af8f01bfec0169f63f6871">itkGetStringMacro</a>(StudyInstanceUID);
<a name="l00115"></a>00115 <a class="code" href="itkMacro_8h.html#bea8d1eeb8af8f01bfec0169f63f6871">itkGetStringMacro</a>(SeriesInstanceUID);
<a name="l00116"></a>00116 <a class="code" href="itkMacro_8h.html#bea8d1eeb8af8f01bfec0169f63f6871">itkGetStringMacro</a>(FrameOfReferenceInstanceUID);
<a name="l00118"></a>00118
<a name="l00121"></a>00121 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(KeepOriginalUID,<span class="keywordtype">bool</span>);
<a name="l00122"></a>00122 <a class="code" href="itkMacro_8h.html#1600305bb01e39e87c472d8bf29bd1cf">itkGetMacro</a>(KeepOriginalUID,<span class="keywordtype">bool</span>);
<a name="l00123"></a>00123 <a class="code" href="itkMacro_8h.html#9e7d129ffebb09fd28bc213e02d87248">itkBooleanMacro</a>(KeepOriginalUID);
<a name="l00125"></a>00125
<a name="l00129"></a>00129 <span class="keywordtype">void</span> GetPatientName(<span class="keywordtype">char</span>* name);
<a name="l00130"></a>00130 <span class="keywordtype">void</span> GetPatientID(<span class="keywordtype">char</span>* <span class="keywordtype">id</span>);
<a name="l00131"></a>00131 <span class="keywordtype">void</span> GetPatientSex(<span class="keywordtype">char</span>* sex);
<a name="l00132"></a>00132 <span class="keywordtype">void</span> GetPatientAge(<span class="keywordtype">char</span>* age);
<a name="l00133"></a>00133 <span class="keywordtype">void</span> GetStudyID(<span class="keywordtype">char</span>* <span class="keywordtype">id</span>);
<a name="l00134"></a>00134 <span class="keywordtype">void</span> GetPatientDOB(<span class="keywordtype">char</span>* dob);
<a name="l00135"></a>00135 <span class="keywordtype">void</span> GetStudyDescription(<span class="keywordtype">char</span>* desc);
<a name="l00136"></a>00136 <span class="keywordtype">void</span> GetBodyPart(<span class="keywordtype">char</span>* part);
<a name="l00137"></a>00137 <span class="keywordtype">void</span> GetNumberOfSeriesInStudy(<span class="keywordtype">char</span>* series);
<a name="l00138"></a>00138 <span class="keywordtype">void</span> GetNumberOfStudyRelatedSeries(<span class="keywordtype">char</span>* series);
<a name="l00139"></a>00139 <span class="keywordtype">void</span> GetStudyDate(<span class="keywordtype">char</span>* date);
<a name="l00140"></a>00140 <span class="keywordtype">void</span> GetModality(<span class="keywordtype">char</span>* modality);
<a name="l00141"></a>00141 <span class="keywordtype">void</span> GetManufacturer(<span class="keywordtype">char</span>* manu);
<a name="l00142"></a>00142 <span class="keywordtype">void</span> GetInstitution(<span class="keywordtype">char</span>* ins);
<a name="l00143"></a>00143 <span class="keywordtype">void</span> GetModel(<span class="keywordtype">char</span>* model);
<a name="l00144"></a>00144 <span class="keywordtype">void</span> GetScanOptions(<span class="keywordtype">char</span> *options);
<a name="l00146"></a>00146
<a name="l00152"></a>00152 <span class="keywordtype">bool</span> GetValueFromTag(<span class="keyword">const</span> std::string & tag, std::string & value);
<a name="l00153"></a>00153
<a name="l00160"></a>00160 <span class="keyword">static</span> <span class="keywordtype">bool</span> GetLabelFromTag( <span class="keyword">const</span> std::string & tag,
<a name="l00161"></a>00161 std::string & labelId );
<a name="l00162"></a>00162
<a name="l00169"></a>00169 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(MaxSizeLoadEntry, <span class="keywordtype">long</span>);
<a name="l00170"></a>00170
<a name="l00175"></a>00175 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(LoadSequences, <span class="keywordtype">bool</span>);
<a name="l00176"></a>00176 <a class="code" href="itkMacro_8h.html#1600305bb01e39e87c472d8bf29bd1cf">itkGetMacro</a>(LoadSequences, <span class="keywordtype">bool</span>);
<a name="l00177"></a>00177 <a class="code" href="itkMacro_8h.html#9e7d129ffebb09fd28bc213e02d87248">itkBooleanMacro</a>(LoadSequences);
<a name="l00179"></a>00179
<a name="l00184"></a>00184 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(LoadPrivateTags, <span class="keywordtype">bool</span>);
<a name="l00185"></a>00185 <a class="code" href="itkMacro_8h.html#1600305bb01e39e87c472d8bf29bd1cf">itkGetMacro</a>(LoadPrivateTags, <span class="keywordtype">bool</span>);
<a name="l00186"></a>00186 <a class="code" href="itkMacro_8h.html#9e7d129ffebb09fd28bc213e02d87248">itkBooleanMacro</a>(LoadPrivateTags);
<a name="l00188"></a>00188
<a name="l00195"></a><a class="code" href="classitk_1_1GDCMImageIO.html#39a788588b7beffd22cc4ceac37fcdeb">00195</a> <span class="keyword">static</span> <span class="keywordtype">void</span> SetLoadSequencesDefault(<span class="keywordtype">bool</span> b)
<a name="l00196"></a>00196 { m_LoadSequencesDefault = b; }
<a name="l00197"></a><a class="code" href="classitk_1_1GDCMImageIO.html#8891eed4f5d339d11092db3967f25f35">00197</a> <span class="keyword">static</span> <span class="keywordtype">void</span> LoadSequencesDefaultOn()
<a name="l00198"></a>00198 { m_LoadSequencesDefault = <span class="keyword">true</span>; }
<a name="l00199"></a><a class="code" href="classitk_1_1GDCMImageIO.html#c066afce4398ea6cc8216fcd8ada655a">00199</a> <span class="keyword">static</span> <span class="keywordtype">void</span> LoadSequencesDefaultOff()
<a name="l00200"></a>00200 { m_LoadSequencesDefault = <span class="keyword">false</span>; }
<a name="l00201"></a><a class="code" href="classitk_1_1GDCMImageIO.html#ac158a855cb5ba0e2cf287ba6b8152b8">00201</a> <span class="keyword">static</span> <span class="keywordtype">bool</span> GetLoadSequencesDefault()
<a name="l00202"></a>00202 { <span class="keywordflow">return</span> m_LoadSequencesDefault; }
<a name="l00204"></a>00204
<a name="l00211"></a><a class="code" href="classitk_1_1GDCMImageIO.html#670b11c4f3c8d24c593641dcb09f8934">00211</a> <span class="keyword">static</span> <span class="keywordtype">void</span> SetLoadPrivateTagsDefault(<span class="keywordtype">bool</span> b)
<a name="l00212"></a>00212 { m_LoadPrivateTagsDefault = b; }
<a name="l00213"></a><a class="code" href="classitk_1_1GDCMImageIO.html#89bb987cd246fe9bfbc15a021f2c5c45">00213</a> <span class="keyword">static</span> <span class="keywordtype">void</span> LoadPrivateTagsDefaultOn()
<a name="l00214"></a>00214 { m_LoadPrivateTagsDefault = <span class="keyword">true</span>; }
<a name="l00215"></a><a class="code" href="classitk_1_1GDCMImageIO.html#1e7e6c28007873d320ca65954e258eb3">00215</a> <span class="keyword">static</span> <span class="keywordtype">void</span> LoadPrivateTagsDefaultOff()
<a name="l00216"></a>00216 { m_LoadPrivateTagsDefault = <span class="keyword">false</span>; }
<a name="l00217"></a><a class="code" href="classitk_1_1GDCMImageIO.html#ae373abd12f65ad361581236dffa53a2">00217</a> <span class="keyword">static</span> <span class="keywordtype">bool</span> GetLoadPrivateTagsDefault()
<a name="l00218"></a>00218 { <span class="keywordflow">return</span> m_LoadPrivateTagsDefault; }
<a name="l00220"></a>00220
<a name="l00222"></a><a class="code" href="classitk_1_1GDCMImageIO.html#4855fb7eb34098bf55d2b9a1b43d8ba7">00222</a> <span class="keyword">typedef</span> <span class="keyword">enum</span> { JPEG = 0, JPEG2000 } TCompressionType;
<a name="l00223"></a>00223 <a class="code" href="itkMacro_8h.html#2e6a8ed98d8d3fa3d7fa50ae5fdbc77c">itkSetEnumMacro</a>(CompressionType,TCompressionType);
<a name="l00224"></a>00224 <a class="code" href="itkMacro_8h.html#6629199f6ac613eb8701226ed84d76c5">itkGetEnumMacro</a>(CompressionType,TCompressionType);
<a name="l00226"></a>00226
<a name="l00227"></a>00227 <span class="keyword">protected</span>:
<a name="l00228"></a>00228 <a class="code" href="classitk_1_1GDCMImageIO.html" title="ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA (V1.0 &amp; V2.0) images...">GDCMImageIO</a>();
<a name="l00229"></a>00229 ~<a class="code" href="classitk_1_1GDCMImageIO.html" title="ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA (V1.0 &amp; V2.0) images...">GDCMImageIO</a>();
<a name="l00230"></a>00230 <span class="keywordtype">void</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#920ae03048a5ad715d803ca2e92b52de">PrintSelf</a>(std::ostream& os, <a class="code" href="classitk_1_1Indent.html" title="Control indentation during Print() invocation.">Indent</a> indent) <span class="keyword">const</span>;
<a name="l00231"></a>00231
<a name="l00232"></a>00232 <span class="keywordtype">bool</span> OpenGDCMFileForReading(std::ifstream& os, <span class="keyword">const</span> <span class="keywordtype">char</span>* filename);
<a name="l00233"></a>00233 <span class="keywordtype">bool</span> OpenGDCMFileForWriting(std::ofstream& os, <span class="keyword">const</span> <span class="keywordtype">char</span>* filename);
<a name="l00234"></a>00234 <span class="keywordtype">void</span> InternalReadImageInformation(std::ifstream& file);
<a name="l00235"></a>00235
<a name="l00236"></a><a class="code" href="classitk_1_1GDCMImageIO.html#d6bae492020723502c7021996d6ad91d">00236</a> <span class="keywordtype">double</span> m_RescaleSlope;
<a name="l00237"></a><a class="code" href="classitk_1_1GDCMImageIO.html#b9543c2d63614b2813d40e5eaba0152d">00237</a> <span class="keywordtype">double</span> m_RescaleIntercept;
<a name="l00238"></a>00238
<a name="l00239"></a><a class="code" href="classitk_1_1GDCMImageIO.html#47e3790ebad22dbedf0eabaea504d48d">00239</a> std::string m_UIDPrefix;
<a name="l00240"></a><a class="code" href="classitk_1_1GDCMImageIO.html#e756fd383f4670890784ec94525685f3">00240</a> std::string m_StudyInstanceUID;
<a name="l00241"></a><a class="code" href="classitk_1_1GDCMImageIO.html#6d17f2321ef56d85fc7eef0a65dd8f86">00241</a> std::string m_SeriesInstanceUID;
<a name="l00242"></a><a class="code" href="classitk_1_1GDCMImageIO.html#9d90d4582b3a3ce20c7abe0b7922a963">00242</a> std::string m_FrameOfReferenceInstanceUID;
<a name="l00243"></a><a class="code" href="classitk_1_1GDCMImageIO.html#3b3d2e20ab842b21410c691075fc3279">00243</a> <span class="keywordtype">bool</span> m_KeepOriginalUID;
<a name="l00244"></a><a class="code" href="classitk_1_1GDCMImageIO.html#a9f309c0523546609b1c9ed8bd33df69">00244</a> <span class="keywordtype">long</span> m_MaxSizeLoadEntry;
<a name="l00245"></a>00245
<a name="l00246"></a>00246 <span class="keyword">private</span>:
<a name="l00247"></a>00247 <a class="code" href="classitk_1_1GDCMImageIO.html" title="ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA (V1.0 &amp; V2.0) images...">GDCMImageIO</a>(<span class="keyword">const</span> <a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00248"></a>00248 <span class="keywordtype">void</span> operator=(<span class="keyword">const</span> <a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00249"></a>00249
<a name="l00250"></a>00250 std::string m_PatientName;
<a name="l00251"></a>00251 std::string m_PatientID;
<a name="l00252"></a>00252 std::string m_PatientDOB;
<a name="l00253"></a>00253 std::string m_StudyID;
<a name="l00254"></a>00254 std::string m_StudyDescription;
<a name="l00255"></a>00255 std::string m_BodyPart;
<a name="l00256"></a>00256 std::string m_NumberOfSeriesInStudy;
<a name="l00257"></a>00257 std::string m_NumberOfStudyRelatedSeries;
<a name="l00258"></a>00258 std::string m_PatientSex;
<a name="l00259"></a>00259 std::string m_PatientAge;
<a name="l00260"></a>00260 std::string m_StudyDate;
<a name="l00261"></a>00261 std::string m_Modality;
<a name="l00262"></a>00262 std::string m_Manufacturer;
<a name="l00263"></a>00263 std::string m_Institution;
<a name="l00264"></a>00264 std::string m_Model;
<a name="l00265"></a>00265 std::string m_ScanOptions;
<a name="l00266"></a>00266
<a name="l00267"></a>00267 <span class="keywordtype">bool</span> m_LoadSequences;
<a name="l00268"></a>00268 <span class="keywordtype">bool</span> m_LoadPrivateTags;
<a name="l00269"></a>00269 <span class="keyword">static</span> <span class="keywordtype">bool</span> m_LoadSequencesDefault;
<a name="l00270"></a>00270 <span class="keyword">static</span> <span class="keywordtype">bool</span> m_LoadPrivateTagsDefault;
<a name="l00271"></a>00271
<a name="l00274"></a>00274 <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> m_GlobalNumberOfDimensions;
<a name="l00275"></a>00275 <a class="code" href="classitk_1_1GDCMImageIO.html#4855fb7eb34098bf55d2b9a1b43d8ba7">TCompressionType</a> m_CompressionType;
<a name="l00276"></a>00276
<a name="l00277"></a>00277 <a class="code" href="classitk_1_1ImageIOBase.html#8dc783055a0af6f0a5a26cb080feb178">ImageIOBase::IOComponentType</a> m_InternalComponentType;
<a name="l00278"></a>00278 InternalHeader * m_DICOMHeader;
<a name="l00279"></a>00279 };
<a name="l00280"></a>00280
<a name="l00281"></a>00281 } <span class="comment">// end namespace itk</span>
<a name="l00282"></a>00282
<a name="l00283"></a>00283 <span class="preprocessor">#endif // __itkGDCMImageIO_h</span>
<a name="l00284"></a>00284 <span class="preprocessor"></span>
</pre></div></div>
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