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<h1>itkIsolatedConnectedImageFilter.h</h1><a href="itkIsolatedConnectedImageFilter_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span>
<a name="l00002"></a>00002 <span class="comment"></span>
<a name="l00003"></a>00003 <span class="comment"> Program: Insight Segmentation & Registration Toolkit</span>
<a name="l00004"></a>00004 <span class="comment"> Module: $RCSfile: itkIsolatedConnectedImageFilter.h,v $</span>
<a name="l00005"></a>00005 <span class="comment"> Language: C++</span>
<a name="l00006"></a>00006 <span class="comment"> Date: $Date: 2008-10-16 16:45:11 $</span>
<a name="l00007"></a>00007 <span class="comment"> Version: $Revision: 1.16 $</span>
<a name="l00008"></a>00008 <span class="comment"></span>
<a name="l00009"></a>00009 <span class="comment"> Copyright (c) Insight Software Consortium. All rights reserved.</span>
<a name="l00010"></a>00010 <span class="comment"> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span>
<a name="l00011"></a>00011 <span class="comment"></span>
<a name="l00012"></a>00012 <span class="comment"> This software is distributed WITHOUT ANY WARRANTY; without even </span>
<a name="l00013"></a>00013 <span class="comment"> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR </span>
<a name="l00014"></a>00014 <span class="comment"> PURPOSE. See the above copyright notices for more information.</span>
<a name="l00015"></a>00015 <span class="comment"></span>
<a name="l00016"></a>00016 <span class="comment">=========================================================================*/</span>
<a name="l00017"></a>00017 <span class="preprocessor">#ifndef __itkIsolatedConnectedImageFilter_h</span>
<a name="l00018"></a>00018 <span class="preprocessor"></span><span class="preprocessor">#define __itkIsolatedConnectedImageFilter_h</span>
<a name="l00019"></a>00019 <span class="preprocessor"></span>
<a name="l00020"></a>00020 <span class="preprocessor">#include "<a class="code" href="itkImage_8h.html">itkImage.h</a>"</span>
<a name="l00021"></a>00021 <span class="preprocessor">#include "<a class="code" href="itkImageToImageFilter_8h.html">itkImageToImageFilter.h</a>"</span>
<a name="l00022"></a>00022
<a name="l00023"></a>00023 <span class="keyword">namespace </span>itk {
<a name="l00024"></a>00024
<a name="l00069"></a>00069 <span class="keyword">template</span> <<span class="keyword">class</span> TInputImage, <span class="keyword">class</span> TOutputImage>
<a name="l00070"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html">00070</a> <span class="keyword">class </span><a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">IsolatedConnectedImageFilter</a>:
<a name="l00071"></a>00071 <span class="keyword">public</span> <a class="code" href="classitk_1_1ImageToImageFilter.html" title="Base class for filters that take an image as input and produce an image as output...">ImageToImageFilter</a><TInputImage,TOutputImage>
<a name="l00072"></a>00072 {
<a name="l00073"></a>00073 <span class="keyword">public</span>:
<a name="l00075"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#f72f75bf4e8bc6fac1829c08511ca340">00075</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">IsolatedConnectedImageFilter</a> <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">Self</a>;
<a name="l00076"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#ffbb8da83e459f158c62a80fd2762361">00076</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1ImageToImageFilter.html">ImageToImageFilter<TInputImage,TOutputImage></a> <a class="code" href="classitk_1_1ImageToImageFilter.html">Superclass</a>;
<a name="l00077"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#57149f10e6dd11fca7ea452a862dd3a6">00077</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<Self></a> <a class="code" href="classitk_1_1SmartPointer.html">Pointer</a>;
<a name="l00078"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#c79ad2e1195ab80ded3ed0c037c53bc1">00078</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<const Self></a> <a class="code" href="classitk_1_1SmartPointer.html">ConstPointer</a>;
<a name="l00079"></a>00079
<a name="l00081"></a>00081 <a class="code" href="itkMacro_8h.html#0fdc15685afa271857c57e7cd482f30c">itkNewMacro</a>(<a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">Self</a>);
<a name="l00082"></a>00082
<a name="l00084"></a>00084 <a class="code" href="itkMacro_8h.html#574c1f86661d409dd32c742307a0e96a">itkTypeMacro</a>(<a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">IsolatedConnectedImageFilter</a>,
<a name="l00085"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#d6bbd157dea908d93b3f55b3717aace4">00085</a> <a class="code" href="classitk_1_1ImageToImageFilter.html" title="Base class for filters that take an image as input and produce an image as output...">ImageToImageFilter</a>);
<a name="l00086"></a>00086
<a name="l00087"></a>00087 <span class="keyword">typedef</span> TInputImage <a class="code" href="namespaceHardConnectedComponentImageFilter.html#3742cbac150bee74daa9aab85ed80623">InputImageType</a>;
<a name="l00088"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#8f991b24d97d29e223bb0b825f89eb95">00088</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#539cce1a3282ba59952dedcbf9cdb23f">InputImageType::Pointer</a> InputImagePointer;
<a name="l00089"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#43f3faac6866188a29543a417ae74459">00089</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#68fafcc6909430ccd70cbc4aeee0107c">InputImageType::ConstPointer</a> InputImageConstPointer;
<a name="l00090"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#b9e211c07ffb9ea813b4ee9687e30a87">00090</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ed8c4a40607d317c666eb96ea265e126">InputImageType::RegionType</a> InputImageRegionType;
<a name="l00091"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#04814082d6fe4cbfd979a9d8e1248d20">00091</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> InputImageType::PixelType InputImagePixelType;
<a name="l00092"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#cbbd59d462e7d9cb37463107f929e441">00092</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">InputImageType::IndexType</a> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">IndexType</a>;
<a name="l00093"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#3e8cd232b61bb747cf718114d2ddf55b">00093</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#5bf82236e1e50e653de84c8ead448599">InputImageType::SizeType</a> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#5bf82236e1e50e653de84c8ead448599">SizeType</a>;
<a name="l00094"></a>00094
<a name="l00095"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#5e063d1b3e2b7bdeb17801b9bbeb662b">00095</a> <span class="keyword">typedef</span> TOutputImage <a class="code" href="namespaceHardConnectedComponentImageFilter.html#386ea018cab3835dcdff2603f4d2280e">OutputImageType</a>;
<a name="l00096"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#2869b1c2d6681b43ce0bbdc849c252b0">00096</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="itkFEMMacro_8h.html#539cce1a3282ba59952dedcbf9cdb23f">OutputImageType::Pointer</a> OutputImagePointer;
<a name="l00097"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#544fb9c6a7fb03cafa8f50deb475b90b">00097</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ed8c4a40607d317c666eb96ea265e126">OutputImageType::RegionType</a> OutputImageRegionType;
<a name="l00098"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#e6e65ca91cbb638499e21def7ae356da">00098</a> <span class="keyword">typedef</span> <span class="keyword">typename</span> OutputImageType::PixelType OutputImagePixelType;
<a name="l00099"></a>00099
<a name="l00100"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#ed82eecf4f73c51e114a0144c2331c37">00100</a> <span class="keyword">typedef</span> std::vector< IndexType > SeedsContainerType;
<a name="l00101"></a>00101
<a name="l00102"></a>00102 <span class="keyword">typedef</span> <span class="keyword">typename</span> NumericTraits<
<a name="l00103"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#bceabe1a9be5e83fb2d75ab655e94c86">00103</a> InputImagePixelType >::RealType InputRealType;
<a name="l00104"></a>00104
<a name="l00105"></a>00105
<a name="l00106"></a>00106 <span class="keywordtype">void</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#920ae03048a5ad715d803ca2e92b52de">PrintSelf</a> ( std::ostream& os, <a class="code" href="classitk_1_1Indent.html" title="Control indentation during Print() invocation.">Indent</a> indent ) <span class="keyword">const</span>;
<a name="l00107"></a>00107
<a name="l00111"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#314c08442971751f6de99910c068877b">00111</a> <span class="keywordtype">void</span> SetSeed1(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">IndexType</a> & seed)
<a name="l00112"></a>00112 {
<a name="l00113"></a>00113 this->ClearSeeds1();
<a name="l00114"></a>00114 this->AddSeed1( seed );
<a name="l00115"></a>00115 }
<a name="l00117"></a>00117
<a name="l00118"></a>00118
<a name="l00120"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#08eb2b6a3871d1a1a3f2498c394b1055">00120</a> <span class="keywordtype">void</span> ClearSeeds1()
<a name="l00121"></a>00121 {
<a name="l00122"></a>00122 m_Seeds1.clear();
<a name="l00123"></a>00123 }
<a name="l00124"></a>00124
<a name="l00125"></a>00125
<a name="l00127"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#11c16d58a3ee055a4cddf3247c336b69">00127</a> <span class="keywordtype">void</span> AddSeed1(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">IndexType</a> & seed)
<a name="l00128"></a>00128 {
<a name="l00129"></a>00129 m_Seeds1.push_back( seed );
<a name="l00130"></a>00130 this->Modified();
<a name="l00131"></a>00131 }
<a name="l00133"></a>00133
<a name="l00136"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#33fbe096e9daa7e254a7f3262c3e0f97">00136</a> <span class="keywordtype">void</span> SetSeed2(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">IndexType</a> & seed)
<a name="l00137"></a>00137 {
<a name="l00138"></a>00138 this->ClearSeeds2();
<a name="l00139"></a>00139 this->AddSeed2( seed );
<a name="l00140"></a>00140 }
<a name="l00142"></a>00142
<a name="l00144"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#cdac8744374532717d6d8bcbb74b842a">00144</a> <span class="keywordtype">void</span> ClearSeeds2()
<a name="l00145"></a>00145 {
<a name="l00146"></a>00146 m_Seeds2.clear();
<a name="l00147"></a>00147 }
<a name="l00148"></a>00148
<a name="l00150"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#d377c54dc4efd88bdab42c8b31a47621">00150</a> <span class="keywordtype">void</span> AddSeed2(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#be32dc19e71d40322ad9828b9ab40853">IndexType</a> & seed)
<a name="l00151"></a>00151 {
<a name="l00152"></a>00152 m_Seeds2.push_back( seed );
<a name="l00153"></a>00153 this->Modified();
<a name="l00154"></a>00154 }
<a name="l00156"></a>00156
<a name="l00159"></a>00159 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(Lower, InputImagePixelType);
<a name="l00160"></a>00160 <a class="code" href="itkMacro_8h.html#7d989c13a1a213168db99ae0f84185d4">itkGetConstReferenceMacro</a>(Lower, InputImagePixelType);
<a name="l00162"></a>00162
<a name="l00165"></a>00165 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(Upper, InputImagePixelType);
<a name="l00166"></a>00166 <a class="code" href="itkMacro_8h.html#7d989c13a1a213168db99ae0f84185d4">itkGetConstReferenceMacro</a>(Upper, InputImagePixelType);
<a name="l00168"></a>00168
<a name="l00172"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#edc20fb5cb2df38f73b1a81404c72180">00172</a> <span class="keywordtype">void</span> SetUpperValueLimit( InputImagePixelType upperValue)
<a name="l00173"></a>00173 {
<a name="l00174"></a>00174 this->SetUpper( upperValue );
<a name="l00175"></a>00175 }
<a name="l00176"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#3647c9a5fe0e9dcb32c282b5bdfb97cb">00176</a> InputImagePixelType GetUpperValueLimit()
<a name="l00177"></a>00177 {
<a name="l00178"></a>00178 <span class="keywordflow">return</span> this->GetUpper();
<a name="l00179"></a>00179 }
<a name="l00181"></a>00181
<a name="l00184"></a>00184 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(IsolatedValueTolerance, InputImagePixelType);
<a name="l00185"></a>00185 <a class="code" href="itkMacro_8h.html#7d989c13a1a213168db99ae0f84185d4">itkGetConstReferenceMacro</a>(IsolatedValueTolerance, InputImagePixelType);
<a name="l00187"></a>00187
<a name="l00191"></a>00191 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(ReplaceValue, OutputImagePixelType);
<a name="l00192"></a>00192 <a class="code" href="itkMacro_8h.html#7d989c13a1a213168db99ae0f84185d4">itkGetConstReferenceMacro</a>(ReplaceValue, OutputImagePixelType);
<a name="l00194"></a>00194
<a name="l00196"></a>00196 <a class="code" href="itkMacro_8h.html#7d989c13a1a213168db99ae0f84185d4">itkGetConstReferenceMacro</a>(IsolatedValue, InputImagePixelType);
<a name="l00197"></a>00197
<a name="l00200"></a>00200 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(FindUpperThreshold,<span class="keywordtype">bool</span>);
<a name="l00201"></a>00201 <a class="code" href="itkMacro_8h.html#9e7d129ffebb09fd28bc213e02d87248">itkBooleanMacro</a>(FindUpperThreshold);
<a name="l00202"></a>00202 <a class="code" href="itkMacro_8h.html#7d989c13a1a213168db99ae0f84185d4">itkGetConstReferenceMacro</a>(FindUpperThreshold,<span class="keywordtype">bool</span>);
<a name="l00204"></a>00204
<a name="l00207"></a>00207 <a class="code" href="itkMacro_8h.html#7d989c13a1a213168db99ae0f84185d4">itkGetConstReferenceMacro</a>(ThresholdingFailed, <span class="keywordtype">bool</span>);
<a name="l00208"></a>00208
<a name="l00209"></a>00209 <span class="preprocessor">#ifdef ITK_USE_CONCEPT_CHECKING</span>
<a name="l00210"></a>00210 <span class="preprocessor"></span>
<a name="l00211"></a>00211 <a class="code" href="itkConceptChecking_8h.html#009eae6c305d9c390972159815e6a710">itkConceptMacro</a>(InputHasNumericTraitsCheck,
<a name="l00212"></a>00212 (<a class="code" href="structitk_1_1Concept_1_1HasNumericTraits.html">Concept::HasNumericTraits<InputImagePixelType></a>));
<a name="l00213"></a>00213
<a name="l00215"></a>00215 <span class="preprocessor">#endif</span>
<a name="l00216"></a>00216 <span class="preprocessor"></span>
<a name="l00217"></a>00217 <span class="keyword">protected</span>:
<a name="l00218"></a>00218 <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">IsolatedConnectedImageFilter</a>();
<a name="l00219"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#f95332a172b062e3e5f19ccbf5f4adfe">00219</a> <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#f95332a172b062e3e5f19ccbf5f4adfe">~IsolatedConnectedImageFilter</a>(){};
<a name="l00220"></a>00220 SeedsContainerType m_Seeds1;
<a name="l00221"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#b34cf40a17e40f12a4c1c8d455edcf3d">00221</a> SeedsContainerType m_Seeds2;
<a name="l00222"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#7bde3af5b8bca44da010cd92ee525cd4">00222</a> InputImagePixelType m_Lower;
<a name="l00223"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#8c021a366b96656cea71cb046e3464bf">00223</a> InputImagePixelType m_Upper;
<a name="l00224"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#b7afcaf6755c09ed7ec80d47f06c0502">00224</a> OutputImagePixelType m_ReplaceValue;
<a name="l00225"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#5109379bc666d4342d1a986b47ec592d">00225</a> InputImagePixelType m_IsolatedValue;
<a name="l00226"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#172541cd82b67d73c1c7d33d5a7a7e52">00226</a> InputImagePixelType m_IsolatedValueTolerance;
<a name="l00227"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#c32791a15892f36ba6f071b4d05c3a9d">00227</a> <span class="keywordtype">bool</span> m_FindUpperThreshold;
<a name="l00228"></a><a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html#a010c46c230ec703a5d15c8913de54d5">00228</a> <span class="keywordtype">bool</span> m_ThresholdingFailed;
<a name="l00229"></a>00229
<a name="l00230"></a>00230 <span class="comment">// Override since the filter needs all the data for the algorithm</span>
<a name="l00231"></a>00231 <span class="keywordtype">void</span> GenerateInputRequestedRegion();
<a name="l00232"></a>00232
<a name="l00233"></a>00233 <span class="comment">// Override since the filter produces the entire dataset</span>
<a name="l00234"></a>00234 <span class="keywordtype">void</span> EnlargeOutputRequestedRegion(<a class="code" href="classitk_1_1DataObject.html" title="Base class for all data objects in ITK.">DataObject</a> *output);
<a name="l00235"></a>00235
<a name="l00236"></a>00236 <span class="keywordtype">void</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#f75a5945cdd8315676941024a0b8c1e9">GenerateData</a>();
<a name="l00237"></a>00237
<a name="l00238"></a>00238 <span class="keyword">private</span>:
<a name="l00239"></a>00239 <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">IsolatedConnectedImageFilter</a>(<span class="keyword">const</span> <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00240"></a>00240 <span class="keywordtype">void</span> operator=(<span class="keyword">const</span> <a class="code" href="classitk_1_1IsolatedConnectedImageFilter.html" title="Label pixels that are connected to one set of seeds but not another.">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00241"></a>00241
<a name="l00242"></a>00242 };
<a name="l00243"></a>00243
<a name="l00244"></a>00244 } <span class="comment">// end namespace itk</span>
<a name="l00245"></a>00245
<a name="l00246"></a>00246 <span class="preprocessor">#ifndef ITK_MANUAL_INSTANTIATION</span>
<a name="l00247"></a>00247 <span class="preprocessor"></span><span class="preprocessor">#include "itkIsolatedConnectedImageFilter.txx"</span>
<a name="l00248"></a>00248 <span class="preprocessor">#endif</span>
<a name="l00249"></a>00249 <span class="preprocessor"></span>
<a name="l00250"></a>00250 <span class="preprocessor">#endif</span>
<a name="l00251"></a>00251 <span class="preprocessor"></span>
</pre></div></div>
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