<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> <html><head><meta name="robots" content="noindex"> <meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1"> <title>ITK: itkNiftiImageIO.h Source File</title> <link href="DoxygenStyle.css" rel="stylesheet" type="text/css"> </head><body bgcolor="#ffffff"> <!-- Section customized for INSIGHT : Tue Jul 17 01:02:45 2001 --> <center> <a href="index.html" class="qindex">Main Page</a> <a href="modules.html" class="qindex">Groups</a> <a href="namespaces.html" class="qindex">Namespace List</a> <a href="hierarchy.html" class="qindex">Class Hierarchy</a> <a href="classes.html" class="qindex">Alphabetical List</a> <a href="annotated.html" class="qindex">Compound List</a> <a href="files.html" class="qindex">File List</a> <a href="namespacemembers.html" class="qindex">Namespace Members</a> <a href="functions.html" class="qindex">Compound Members</a> <a href="globals.html" class="qindex">File Members</a> <a href="pages.html" class="qindex">Concepts</a></center> <!-- Generated by Doxygen 1.5.9 --> <div class="navpath"><a class="el" href="dir_02e23d841c198393a6e961e9a0678fff.html">Code</a> » <a class="el" href="dir_1ee1ddeef2dd172ba0b5030f5ec71db5.html">IO</a> </div> <div class="contents"> <h1>itkNiftiImageIO.h</h1><a href="itkNiftiImageIO_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span> <a name="l00002"></a>00002 <span class="comment"></span> <a name="l00003"></a>00003 <span class="comment"> Program: Insight Segmentation & Registration Toolkit</span> <a name="l00004"></a>00004 <span class="comment"> Module: $RCSfile: itkNiftiImageIO.h,v $</span> <a name="l00005"></a>00005 <span class="comment"> Language: C++</span> <a name="l00006"></a>00006 <span class="comment"> Date: $Date: 2008-03-04 03:07:42 $</span> <a name="l00007"></a>00007 <span class="comment"> Version: $Revision: 1.14 $</span> <a name="l00008"></a>00008 <span class="comment"></span> <a name="l00009"></a>00009 <span class="comment"> Copyright (c) Insight Software Consortium. All rights reserved.</span> <a name="l00010"></a>00010 <span class="comment"> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span> <a name="l00011"></a>00011 <span class="comment"></span> <a name="l00012"></a>00012 <span class="comment"> This software is distributed WITHOUT ANY WARRANTY; without even </span> <a name="l00013"></a>00013 <span class="comment"> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR </span> <a name="l00014"></a>00014 <span class="comment"> PURPOSE. See the above copyright notices for more information.</span> <a name="l00015"></a>00015 <span class="comment"></span> <a name="l00016"></a>00016 <span class="comment">=========================================================================*/</span> <a name="l00017"></a>00017 <a name="l00025"></a>00025 <span class="preprocessor">#ifndef __itkNiftiImageIO_h</span> <a name="l00026"></a>00026 <span class="preprocessor"></span><span class="preprocessor">#define __itkNiftiImageIO_h</span> <a name="l00027"></a>00027 <span class="preprocessor"></span> <a name="l00028"></a>00028 <span class="preprocessor">#ifdef _MSC_VER</span> <a name="l00029"></a>00029 <span class="preprocessor"></span><span class="preprocessor">#pragma warning ( disable : 4786 )</span> <a name="l00030"></a>00030 <span class="preprocessor"></span><span class="preprocessor">#endif</span> <a name="l00031"></a>00031 <span class="preprocessor"></span> <a name="l00032"></a>00032 <span class="preprocessor">#include <fstream></span> <a name="l00033"></a>00033 <span class="preprocessor">#include "<a class="code" href="itkImageIOBase_8h.html">itkImageIOBase.h</a>"</span> <a name="l00034"></a>00034 <span class="preprocessor">#include <nifti1_io.h></span> <a name="l00035"></a>00035 <a name="l00036"></a>00036 <span class="keyword">namespace </span>itk <a name="l00037"></a>00037 { <a name="l00038"></a>00038 <a name="l00047"></a><a class="code" href="classitk_1_1NiftiImageIO.html">00047</a> <span class="keyword">class </span><a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="classitk_1_1NiftiImageIO.html" title="Class that defines how to read Nifti file format. Nifti IMAGE FILE FORMAT - As much...">NiftiImageIO</a> : <span class="keyword">public</span> <a class="code" href="classitk_1_1ImageIOBase.html" title="Abstract superclass defines image IO interface.">ImageIOBase</a> <a name="l00048"></a>00048 { <a name="l00049"></a>00049 <span class="keyword">public</span>: <a name="l00051"></a><a class="code" href="classitk_1_1NiftiImageIO.html#f6b35ec4fa9481778f8a8c090f601e1c">00051</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1NiftiImageIO.html" title="Class that defines how to read Nifti file format. Nifti IMAGE FILE FORMAT - As much...">NiftiImageIO</a> <a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>; <a name="l00052"></a><a class="code" href="classitk_1_1NiftiImageIO.html#c97783ee4d7b7294b7c89fd0bde820af">00052</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1ImageIOBase.html" title="Abstract superclass defines image IO interface.">ImageIOBase</a> <a class="code" href="classitk_1_1Object.html" title="Base class for most itk classes.">Superclass</a>; <a name="l00053"></a><a class="code" href="classitk_1_1NiftiImageIO.html#3d4fa96f21da474e3f8ce496d2da7309">00053</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<Self></a> <a class="code" href="classitk_1_1SmartPointer.html">Pointer</a>; <a name="l00054"></a>00054 <a name="l00056"></a>00056 <a class="code" href="itkMacro_8h.html#0fdc15685afa271857c57e7cd482f30c">itkNewMacro</a>(<a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>); <a name="l00057"></a>00057 <a name="l00059"></a>00059 <a class="code" href="itkMacro_8h.html#574c1f86661d409dd32c742307a0e96a">itkTypeMacro</a>(<a class="code" href="classitk_1_1NiftiImageIO.html" title="Class that defines how to read Nifti file format. Nifti IMAGE FILE FORMAT - As much...">NiftiImageIO</a>, <a class="code" href="classitk_1_1Object.html" title="Base class for most itk classes.">Superclass</a>); <a name="l00060"></a>00060 <a name="l00061"></a>00061 <span class="comment">/*-------- This part of the interfaces deals with reading data. ----- */</span> <a name="l00062"></a>00062 <a name="l00069"></a>00069 <span class="keyword">virtual</span> <span class="keywordtype">bool</span> CanReadFile(<span class="keyword">const</span> <span class="keywordtype">char</span>* FileNameToRead); <a name="l00070"></a>00070 <a name="l00072"></a>00072 <span class="keyword">virtual</span> <span class="keywordtype">void</span> ReadImageInformation(); <a name="l00073"></a>00073 <a name="l00075"></a>00075 <span class="keyword">virtual</span> <span class="keywordtype">void</span> Read(<span class="keywordtype">void</span>* buffer); <a name="l00076"></a>00076 <a name="l00077"></a>00077 <span class="comment">/*-------- This part of the interfaces deals with writing data. ----- */</span> <a name="l00078"></a>00078 <a name="l00085"></a>00085 <span class="keyword">virtual</span> <span class="keywordtype">bool</span> CanWriteFile(<span class="keyword">const</span> <span class="keywordtype">char</span> * FileNameToWrite); <a name="l00086"></a>00086 <a name="l00088"></a>00088 <span class="keyword">virtual</span> <span class="keywordtype">void</span> WriteImageInformation(); <a name="l00089"></a>00089 <a name="l00092"></a>00092 <span class="keyword">virtual</span> <span class="keywordtype">void</span> Write(<span class="keyword">const</span> <span class="keywordtype">void</span>* buffer); <a name="l00093"></a>00093 <a name="l00096"></a>00096 <span class="keyword">virtual</span> <a class="code" href="classitk_1_1ImageIORegion.html" title="An ImageIORegion represents a structured region of data.">ImageIORegion</a> <a name="l00097"></a>00097 GenerateStreamableReadRegionFromRequestedRegion( <span class="keyword">const</span> <a class="code" href="classitk_1_1ImageIORegion.html" title="An ImageIORegion represents a structured region of data.">ImageIORegion</a> & requestedRegion ) <span class="keyword">const</span>; <a name="l00098"></a>00098 <a name="l00104"></a>00104 <a class="code" href="itkMacro_8h.html#7ebdd33cc5e7d74720ced9099c034faa">itkSetMacro</a>(LegacyAnalyze75Mode,<span class="keywordtype">bool</span>); <a name="l00105"></a>00105 <a class="code" href="itkMacro_8h.html#1600305bb01e39e87c472d8bf29bd1cf">itkGetMacro</a>(LegacyAnalyze75Mode,<span class="keywordtype">bool</span>); <a name="l00107"></a>00107 <a name="l00108"></a>00108 <span class="keyword">protected</span>: <a name="l00109"></a>00109 <a class="code" href="classitk_1_1NiftiImageIO.html" title="Class that defines how to read Nifti file format. Nifti IMAGE FILE FORMAT - As much...">NiftiImageIO</a>(); <a name="l00110"></a>00110 ~<a class="code" href="classitk_1_1NiftiImageIO.html" title="Class that defines how to read Nifti file format. Nifti IMAGE FILE FORMAT - As much...">NiftiImageIO</a>(); <a name="l00111"></a>00111 <span class="keywordtype">void</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#920ae03048a5ad715d803ca2e92b52de">PrintSelf</a>(std::ostream& os, <a class="code" href="classitk_1_1Indent.html" title="Control indentation during Print() invocation.">Indent</a> indent) <span class="keyword">const</span>; <a name="l00112"></a><a class="code" href="classitk_1_1NiftiImageIO.html#b8b4264d154afa85aa245bc4f84fcd87">00112</a> <span class="keyword">virtual</span> <span class="keywordtype">bool</span> <a class="code" href="classitk_1_1NiftiImageIO.html#b8b4264d154afa85aa245bc4f84fcd87">GetUseLegacyModeForTwoFileWriting</a>(<span class="keywordtype">void</span>)<span class="keyword"> const </span>{ <span class="keywordflow">return</span> <span class="keyword">false</span>; } <a name="l00113"></a>00113 <span class="keyword">private</span>: <a name="l00114"></a>00114 <span class="keywordtype">bool</span> MustRescale(); <a name="l00115"></a>00115 <span class="keywordtype">void</span> DefineHeaderObjectDataType(); <a name="l00116"></a>00116 <span class="keywordtype">void</span> SetNIfTIOrientationFromImageIO(<span class="keywordtype">unsigned</span> <span class="keywordtype">short</span> <span class="keywordtype">int</span> origdims, <span class="keywordtype">unsigned</span> <span class="keywordtype">short</span> <span class="keywordtype">int</span> dims); <a name="l00117"></a>00117 <span class="keywordtype">void</span> SetImageIOOrientationFromNIfTI(<span class="keywordtype">unsigned</span> <span class="keywordtype">short</span> <span class="keywordtype">int</span> dims); <a name="l00118"></a>00118 <a name="l00119"></a>00119 nifti_image * m_NiftiImage; <a name="l00120"></a>00120 <span class="keywordtype">double</span> m_RescaleSlope; <a name="l00121"></a>00121 <span class="keywordtype">double</span> m_RescaleIntercept; <a name="l00122"></a>00122 IOComponentType m_OnDiskComponentType; <a name="l00123"></a>00123 <span class="keywordtype">bool</span> m_LegacyAnalyze75Mode; <a name="l00124"></a>00124 <a name="l00125"></a>00125 <a class="code" href="classitk_1_1NiftiImageIO.html" title="Class that defines how to read Nifti file format. Nifti IMAGE FILE FORMAT - As much...">NiftiImageIO</a>(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ac7d0120fe5292cdcdddb6163b8cb150">Self</a>&); <span class="comment">//purposely not implemented</span> <a name="l00126"></a>00126 <span class="keywordtype">void</span> operator=(<span class="keyword">const</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#ac7d0120fe5292cdcdddb6163b8cb150">Self</a>&); <span class="comment">//purposely not implemented</span> <a name="l00127"></a>00127 }; <a name="l00128"></a>00128 <a name="l00129"></a>00129 } <span class="comment">// end namespace itk</span> <a name="l00130"></a>00130 <a name="l00131"></a>00131 <span class="preprocessor">#endif // __itkNiftiImageIO_h</span> <a name="l00132"></a>00132 <span class="preprocessor"></span> </pre></div></div> <hr><address><small> Generated at Thu May 7 23:41:20 2009 for ITK by <a href="http://www.stack.nl/~dimitri/doxygen/index.html"> <img src="http://www.stack.nl/~dimitri/doxygen/doxygen.png" alt="doxygen" align="middle" border=0 width=110 height=53> </a> 1.5.9 written by <a href="mailto:dimitri@stack.nl">Dimitri van Heesch</a>, © 1997-2000</small></address> </body> </html>