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<h1>itkPhilipsPAR.h</h1><a href="itkPhilipsPAR_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span>
<a name="l00002"></a>00002 <span class="comment"></span>
<a name="l00003"></a>00003 <span class="comment"> Program: Insight Segmentation & Registration Toolkit</span>
<a name="l00004"></a>00004 <span class="comment"> Module: $RCSfile: itkPhilipsPAR.h,v $</span>
<a name="l00005"></a>00005 <span class="comment"> Language: C++</span>
<a name="l00006"></a>00006 <span class="comment"> Date: $Date: 2008-06-23 22:04:35 $</span>
<a name="l00007"></a>00007 <span class="comment"> Version: $Revision: 1.3 $</span>
<a name="l00008"></a>00008 <span class="comment"></span>
<a name="l00009"></a>00009 <span class="comment"> Copyright (c) Insight Software Consortium. All rights reserved.</span>
<a name="l00010"></a>00010 <span class="comment"> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span>
<a name="l00011"></a>00011 <span class="comment"></span>
<a name="l00012"></a>00012 <span class="comment"> This software is distributed WITHOUT ANY WARRANTY; without even</span>
<a name="l00013"></a>00013 <span class="comment"> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR</span>
<a name="l00014"></a>00014 <span class="comment"> PURPOSE. See the above copyright notices for more information.</span>
<a name="l00015"></a>00015 <span class="comment"></span>
<a name="l00016"></a>00016 <span class="comment">=========================================================================*/</span>
<a name="l00017"></a>00017
<a name="l00033"></a>00033 <span class="preprocessor">#ifndef __itkPhilipsPAR_h</span>
<a name="l00034"></a>00034 <span class="preprocessor"></span><span class="preprocessor">#define __itkPhilipsPAR_h</span>
<a name="l00035"></a>00035 <span class="preprocessor"></span>
<a name="l00036"></a>00036 <span class="preprocessor">#include <stdio.h></span>
<a name="l00037"></a>00037 <span class="preprocessor">#include <stdlib.h></span>
<a name="l00038"></a>00038 <span class="preprocessor">#include <string></span>
<a name="l00039"></a>00039 <span class="preprocessor">#include "<a class="code" href="itkVectorContainer_8h.html">itkVectorContainer.h</a>"</span>
<a name="l00040"></a>00040 <span class="preprocessor">#include "vnl/vnl_vector_fixed.h"</span>
<a name="l00041"></a>00041
<a name="l00042"></a><a class="code" href="itkPhilipsPAR_8h.html#591b1e0eedce899315373ddc4c8d442a">00042</a> <span class="preprocessor">#define RESEARCH_IMAGE_EXPORT_TOOL_V3 3</span>
<a name="l00043"></a><a class="code" href="itkPhilipsPAR_8h.html#799c14f59088dfb2262c13835e99803b">00043</a> <span class="preprocessor"></span><span class="preprocessor">#define RESEARCH_IMAGE_EXPORT_TOOL_V4 4</span>
<a name="l00044"></a><a class="code" href="itkPhilipsPAR_8h.html#0790ffb88b48654dad0165b28834982f">00044</a> <span class="preprocessor"></span><span class="preprocessor">#define RESEARCH_IMAGE_EXPORT_TOOL_V4_1 41</span>
<a name="l00045"></a>00045 <span class="preprocessor"></span>
<a name="l00046"></a><a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">00046</a> <span class="preprocessor">#define PAR_DEFAULT_STRING_LENGTH 32</span>
<a name="l00047"></a><a class="code" href="itkPhilipsPAR_8h.html#a7f599e539a854df93a278d92284d76a">00047</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_DEFAULT_TRIGGER_TIMES_SIZE 128</span>
<a name="l00048"></a><a class="code" href="itkPhilipsPAR_8h.html#02d6c88f3d1bab5313e72e5207483eeb">00048</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_DEFAULT_ECHO_TIMES_SIZE 128</span>
<a name="l00049"></a><a class="code" href="itkPhilipsPAR_8h.html#1b5e9a3105306606c612de37625d7506">00049</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_DEFAULT_REP_TIMES_SIZE 128</span>
<a name="l00050"></a><a class="code" href="itkPhilipsPAR_8h.html#8a53fa9729e10eb457a34a657eb5cae1">00050</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_DEFAULT_IMAGE_TYPES_SIZE 8</span>
<a name="l00051"></a><a class="code" href="itkPhilipsPAR_8h.html#357e4209577cfda328e0fa6ebed6bf2e">00051</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_DEFAULT_SCAN_SEQUENCE_SIZE 8</span>
<a name="l00052"></a><a class="code" href="itkPhilipsPAR_8h.html#a0d6bd6727ab94e3cc35cdd41e6751a3">00052</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_RESCALE_VALUES_SIZE 3</span>
<a name="l00053"></a><a class="code" href="itkPhilipsPAR_8h.html#079f1be4549d02b1fc35c6fd4e49983e">00053</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_DIFFUSION_VALUES_SIZE 3</span>
<a name="l00054"></a>00054 <span class="preprocessor"></span>
<a name="l00055"></a><a class="code" href="itkPhilipsPAR_8h.html#3a396d3fe6205df24449eb1146fec46f">00055</a> <span class="preprocessor">#define PAR_SLICE_ORIENTATION_TRANSVERSAL 1</span>
<a name="l00056"></a><a class="code" href="itkPhilipsPAR_8h.html#a01ce87cc8174be6af02487dc533b414">00056</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_SLICE_ORIENTATION_SAGITTAL 2</span>
<a name="l00057"></a><a class="code" href="itkPhilipsPAR_8h.html#0563ec0bb3b8cf692f8b58a3adb08e7b">00057</a> <span class="preprocessor"></span><span class="preprocessor">#define PAR_SLICE_ORIENTATION_CORONAL 3</span>
<a name="l00058"></a>00058 <span class="preprocessor"></span>
<a name="l00059"></a>00059 <span class="keyword">namespace </span>itk
<a name="l00060"></a>00060 {
<a name="l00061"></a>00061
<a name="l00065"></a><a class="code" href="structitk_1_1par__parameter.html">00065</a> <span class="keyword">struct </span><a class="code" href="structitk_1_1par__parameter.html">par_parameter</a> <span class="comment">//par_parameter</span>
<a name="l00066"></a>00066 {
<a name="l00067"></a><a class="code" href="structitk_1_1par__parameter.html#51df330fb85b711e0ddba208caebdf6c">00067</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#51df330fb85b711e0ddba208caebdf6c">problemreading</a>; <span class="comment">// Marked 1 if problem occurred reading in PAR file</span>
<a name="l00068"></a><a class="code" href="structitk_1_1par__parameter.html#b43c5e1d4eb420c31ce3f3dd046d3205">00068</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#b43c5e1d4eb420c31ce3f3dd046d3205">ResToolsVersion</a>; <span class="comment">// V3, V4, or V4.1 PAR/REC version</span>
<a name="l00069"></a><a class="code" href="structitk_1_1par__parameter.html#6f943c722ea578429710879aca297894">00069</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#6f943c722ea578429710879aca297894">patient_name</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Patient name</span>
<a name="l00070"></a><a class="code" href="structitk_1_1par__parameter.html#8202d5f4ce6f31acd10fa3c362d4884c">00070</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#8202d5f4ce6f31acd10fa3c362d4884c">exam_name</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Examination name</span>
<a name="l00071"></a><a class="code" href="structitk_1_1par__parameter.html#7291af77e1a3454f2ec49cf92fa8ee6e">00071</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#7291af77e1a3454f2ec49cf92fa8ee6e">protocol_name</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Protocol name</span>
<a name="l00072"></a><a class="code" href="structitk_1_1par__parameter.html#2d170cfbdf755418853af07b94e1bdc1">00072</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#2d170cfbdf755418853af07b94e1bdc1">exam_date</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Examination date/time</span>
<a name="l00073"></a><a class="code" href="structitk_1_1par__parameter.html#dbf85c89e835ed55f26633013a8ec5b4">00073</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#dbf85c89e835ed55f26633013a8ec5b4">exam_time</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Examination date/time</span>
<a name="l00074"></a><a class="code" href="structitk_1_1par__parameter.html#9b3457ce143fc51ffafe38ee2e269ee9">00074</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#9b3457ce143fc51ffafe38ee2e269ee9">series_type</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Series Type</span>
<a name="l00075"></a><a class="code" href="structitk_1_1par__parameter.html#25283ef28551b8c4f048e359bd75c6b8">00075</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#25283ef28551b8c4f048e359bd75c6b8">scno</a>; <span class="comment">// Acquisition nr</span>
<a name="l00076"></a><a class="code" href="structitk_1_1par__parameter.html#48f440485d0d8b493010f6074b659e65">00076</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#48f440485d0d8b493010f6074b659e65">recno</a>; <span class="comment">// Reconstruction nr</span>
<a name="l00077"></a><a class="code" href="structitk_1_1par__parameter.html#338d56d2ebbd323a9be6aca82481c0d9">00077</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#338d56d2ebbd323a9be6aca82481c0d9">scan_duration</a>; <span class="comment">// Scan Duration [sec]</span>
<a name="l00078"></a><a class="code" href="structitk_1_1par__parameter.html#ba663728230ae7567c3f190619b119e8">00078</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#ba663728230ae7567c3f190619b119e8">cardiac_phases</a>; <span class="comment">// Max. number of cardiac phases</span>
<a name="l00079"></a><a class="code" href="structitk_1_1par__parameter.html#15020921518da9ae96817363c8252b9d">00079</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#15020921518da9ae96817363c8252b9d">trigger_times</a>[<a class="code" href="itkPhilipsPAR_8h.html#a7f599e539a854df93a278d92284d76a">PAR_DEFAULT_TRIGGER_TIMES_SIZE</a>]; <span class="comment">// trigger_time (float)</span>
<a name="l00080"></a><a class="code" href="structitk_1_1par__parameter.html#6215fedf5a6dc0a0082997d9f53c3cfa">00080</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#6215fedf5a6dc0a0082997d9f53c3cfa">echoes</a>; <span class="comment">// Max. number of echoes</span>
<a name="l00081"></a><a class="code" href="structitk_1_1par__parameter.html#5f2ea289c09604a3ff0f5c72cece611e">00081</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#5f2ea289c09604a3ff0f5c72cece611e">echo_times</a>[<a class="code" href="itkPhilipsPAR_8h.html#02d6c88f3d1bab5313e72e5207483eeb">PAR_DEFAULT_ECHO_TIMES_SIZE</a>]; <span class="comment">// Echo times read from PAR file</span>
<a name="l00082"></a><a class="code" href="structitk_1_1par__parameter.html#f13444b55befd514e3952b069120bb46">00082</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#f13444b55befd514e3952b069120bb46">slice</a>; <span class="comment">// Max. number of slices/locations</span>
<a name="l00083"></a><a class="code" href="structitk_1_1par__parameter.html#5fae0f333a07e8f0e2921678a1c8607a">00083</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#5fae0f333a07e8f0e2921678a1c8607a">dyn</a>; <span class="comment">// Max. number of dynamics</span>
<a name="l00084"></a><a class="code" href="structitk_1_1par__parameter.html#15f6edabcc115a2ca382d888f5e1012c">00084</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#15f6edabcc115a2ca382d888f5e1012c">mixes</a>; <span class="comment">// Max. number of mixes</span>
<a name="l00085"></a><a class="code" href="structitk_1_1par__parameter.html#ca58d6cf55c417f2debca2ff34bffd89">00085</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#ca58d6cf55c417f2debca2ff34bffd89">patient_position</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Patient position</span>
<a name="l00086"></a><a class="code" href="structitk_1_1par__parameter.html#ae08470b168996871d662b0a93e1eb8f">00086</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#ae08470b168996871d662b0a93e1eb8f">prep_direction</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Preparation direction</span>
<a name="l00087"></a><a class="code" href="structitk_1_1par__parameter.html#219551ddce6c3ccd80ee23128db65d1d">00087</a> <span class="keywordtype">short</span> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#219551ddce6c3ccd80ee23128db65d1d">bit</a>; <span class="comment">// Image pixel size [8 or 16 bits]</span>
<a name="l00088"></a><a class="code" href="structitk_1_1par__parameter.html#261dd9dfbdf518f8be0ad1c3145395a7">00088</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#261dd9dfbdf518f8be0ad1c3145395a7">technique</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Technique</span>
<a name="l00089"></a><a class="code" href="structitk_1_1par__parameter.html#f791f489a67ee03e9cebac7ff4bd6d9f">00089</a> <span class="keywordtype">char</span> <a class="code" href="structitk_1_1par__parameter.html#f791f489a67ee03e9cebac7ff4bd6d9f">scan_mode</a>[<a class="code" href="itkPhilipsPAR_8h.html#eb61072b4700885e267858bc07e3a5ef">PAR_DEFAULT_STRING_LENGTH</a>]; <span class="comment">// Scan mode</span>
<a name="l00090"></a><a class="code" href="structitk_1_1par__parameter.html#9f3e183e9915f9c034a4f0ac27edd035">00090</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#9f3e183e9915f9c034a4f0ac27edd035">num_averages</a>; <span class="comment">// Number of averages</span>
<a name="l00091"></a><a class="code" href="structitk_1_1par__parameter.html#65dae1afb7f3a6828202a8062bf2fbbc">00091</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#65dae1afb7f3a6828202a8062bf2fbbc">scan_resolution</a>[2]; <span class="comment">// Scan resolution (x, y)</span>
<a name="l00092"></a><a class="code" href="structitk_1_1par__parameter.html#8556d5400d46edb0cbd2fcc2a01d008f">00092</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#8556d5400d46edb0cbd2fcc2a01d008f">scan_percent</a>; <span class="comment">// Scan percentage</span>
<a name="l00093"></a><a class="code" href="structitk_1_1par__parameter.html#c4cbdc7fdb4ee30e14e70def1a47d030">00093</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#c4cbdc7fdb4ee30e14e70def1a47d030">dim</a>[3]; <span class="comment">// Recon resolution (x, y) + slices (z)</span>
<a name="l00094"></a><a class="code" href="structitk_1_1par__parameter.html#c25b79410099f5a990bccc3dea3d700d">00094</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#c25b79410099f5a990bccc3dea3d700d">repetition_time</a>[<a class="code" href="itkPhilipsPAR_8h.html#1b5e9a3105306606c612de37625d7506">PAR_DEFAULT_REP_TIMES_SIZE</a>]; <span class="comment">// Repetition time [msec]</span>
<a name="l00095"></a><a class="code" href="structitk_1_1par__parameter.html#9f99b0e2468d33382fd7f92335e4fbbd">00095</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#9f99b0e2468d33382fd7f92335e4fbbd">sliceorient</a>; <span class="comment">// slice orientation ( TRA/SAG/COR ) (integer)</span>
<a name="l00096"></a><a class="code" href="structitk_1_1par__parameter.html#4204e0c70d10918bc4b3031695160f1e">00096</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#4204e0c70d10918bc4b3031695160f1e">slth</a>; <span class="comment">// Slice thickness [mm]</span>
<a name="l00097"></a><a class="code" href="structitk_1_1par__parameter.html#18e81002d81ec50dfe1756bfe7640035">00097</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#18e81002d81ec50dfe1756bfe7640035">gap</a>; <span class="comment">// Slice gap [mm]</span>
<a name="l00098"></a><a class="code" href="structitk_1_1par__parameter.html#17ab1dd7827b94bea7277b8f781ab967">00098</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#17ab1dd7827b94bea7277b8f781ab967">fov</a>[3]; <span class="comment">// FOV (ap,fh,rl) [mm]</span>
<a name="l00099"></a><a class="code" href="structitk_1_1par__parameter.html#a3b6f9e66d850bff4add3bdf3888e4fe">00099</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#a3b6f9e66d850bff4add3bdf3888e4fe">water_fat_shift</a>; <span class="comment">// Water Fat shift [pixels]</span>
<a name="l00100"></a><a class="code" href="structitk_1_1par__parameter.html#a60f4366181d721e0d37e7eb80414909">00100</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#a60f4366181d721e0d37e7eb80414909">angAP</a>; <span class="comment">// Angulation midslice(ap,fh,rl)[degr]</span>
<a name="l00101"></a><a class="code" href="structitk_1_1par__parameter.html#d1dc3576ee5680da99102948aeaf3d49">00101</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#d1dc3576ee5680da99102948aeaf3d49">angFH</a>; <span class="comment">// Angulation midslice(ap,fh,rl)[degr]</span>
<a name="l00102"></a><a class="code" href="structitk_1_1par__parameter.html#023e83c2e09c843b306c14361f27f826">00102</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#023e83c2e09c843b306c14361f27f826">angRL</a>; <span class="comment">// Angulation midslice(ap,fh,rl)[degr]</span>
<a name="l00103"></a><a class="code" href="structitk_1_1par__parameter.html#1b6bff793e899c9d959adb7e02f196f8">00103</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#1b6bff793e899c9d959adb7e02f196f8">offAP</a>; <span class="comment">// Off Centre midslice(ap,fh,rl) [mm]</span>
<a name="l00104"></a><a class="code" href="structitk_1_1par__parameter.html#2e08a93728d9a395e73d41cc1cbbd2cf">00104</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#2e08a93728d9a395e73d41cc1cbbd2cf">offFH</a>; <span class="comment">// Off Centre midslice(ap,fh,rl) [mm]</span>
<a name="l00105"></a><a class="code" href="structitk_1_1par__parameter.html#021f341b801e69413b0b2597291ca112">00105</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#021f341b801e69413b0b2597291ca112">offRL</a>; <span class="comment">// Off Centre midslice(ap,fh,rl) [mm]</span>
<a name="l00106"></a><a class="code" href="structitk_1_1par__parameter.html#977ba06ddb66fe37232666989459ff4b">00106</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#977ba06ddb66fe37232666989459ff4b">flow_comp</a>; <span class="comment">// Flow compensation <0=no 1=yes> ?</span>
<a name="l00107"></a><a class="code" href="structitk_1_1par__parameter.html#c84a753d43cc4c1586cf85b868796eb2">00107</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#c84a753d43cc4c1586cf85b868796eb2">presaturation</a>; <span class="comment">// Presaturation <0=no 1=yes> ?</span>
<a name="l00108"></a><a class="code" href="structitk_1_1par__parameter.html#e74d7d036d225d54321dee7348aea05f">00108</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#e74d7d036d225d54321dee7348aea05f">cardiac_freq</a>; <span class="comment">// Cardiac frequency</span>
<a name="l00109"></a><a class="code" href="structitk_1_1par__parameter.html#dafc154ec665b96d1165c8f2f04da698">00109</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#dafc154ec665b96d1165c8f2f04da698">min_rr_int</a>; <span class="comment">// Min. RR interval</span>
<a name="l00110"></a><a class="code" href="structitk_1_1par__parameter.html#c258d97c2106aa834960c428ddf4a7a7">00110</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#c258d97c2106aa834960c428ddf4a7a7">max_rr_int</a>; <span class="comment">// Max. RR interval</span>
<a name="l00111"></a><a class="code" href="structitk_1_1par__parameter.html#33269d189aa103aaa6f4431cb3a7ec13">00111</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#33269d189aa103aaa6f4431cb3a7ec13">phase_encode_vel</a>[3]; <span class="comment">// Phase encoding velocity [cm/sec]</span>
<a name="l00112"></a><a class="code" href="structitk_1_1par__parameter.html#548d06fd4bb708188673355dae7cfddc">00112</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#548d06fd4bb708188673355dae7cfddc">mtc</a>; <span class="comment">// MTC <0=no 1=yes> ?</span>
<a name="l00113"></a><a class="code" href="structitk_1_1par__parameter.html#e6171e33c8cd9da4db1c0a63fc859b22">00113</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#e6171e33c8cd9da4db1c0a63fc859b22">spir</a>; <span class="comment">// SPIR <0=no 1=yes> ?</span>
<a name="l00114"></a><a class="code" href="structitk_1_1par__parameter.html#c001dcda89fc5018f5a81ad3296def73">00114</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#c001dcda89fc5018f5a81ad3296def73">epi</a>; <span class="comment">// EPI factor <0,1=no EPI></span>
<a name="l00115"></a><a class="code" href="structitk_1_1par__parameter.html#a9b1bb75499eda11753e9ba760dba80a">00115</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#a9b1bb75499eda11753e9ba760dba80a">turbo</a>; <span class="comment">// TURBO factor <0=no turbo></span>
<a name="l00116"></a><a class="code" href="structitk_1_1par__parameter.html#2a41a7b815d6d7e1ecbb1c693da3ba58">00116</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#2a41a7b815d6d7e1ecbb1c693da3ba58">dynamic_scan</a>; <span class="comment">// Dynamic scan <0=no 1=yes> ?</span>
<a name="l00117"></a><a class="code" href="structitk_1_1par__parameter.html#f57193594ddbd9ce494d2649ed63f8c6">00117</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#f57193594ddbd9ce494d2649ed63f8c6">diffusion</a>; <span class="comment">// Diffusion <0=no 1=yes> ?</span>
<a name="l00118"></a><a class="code" href="structitk_1_1par__parameter.html#762144665c332088551502e265ca86eb">00118</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#762144665c332088551502e265ca86eb">diff_echo</a>; <span class="comment">// Diffusion echo time [msec]</span>
<a name="l00119"></a><a class="code" href="structitk_1_1par__parameter.html#be6d9758ff4aba3c67f4d3ee9bbe4cf9">00119</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#be6d9758ff4aba3c67f4d3ee9bbe4cf9">max_num_diff_vals</a>; <span class="comment">// Max. number of diffusion values</span>
<a name="l00120"></a><a class="code" href="structitk_1_1par__parameter.html#daeedee78b90fb8f18680508c70ea53e">00120</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#daeedee78b90fb8f18680508c70ea53e">max_num_grad_orient</a>; <span class="comment">// Max. number of gradient orients</span>
<a name="l00121"></a><a class="code" href="structitk_1_1par__parameter.html#16e10202c5e705514fe0b85f53c62dba">00121</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#16e10202c5e705514fe0b85f53c62dba">inversion_delay</a>; <span class="comment">// Inversion delay [msec]</span>
<a name="l00122"></a><a class="code" href="structitk_1_1par__parameter.html#31e921c5ad04599f04b594785c6f4d17">00122</a> <span class="keywordtype">float</span> <a class="code" href="structitk_1_1par__parameter.html#31e921c5ad04599f04b594785c6f4d17">vox</a>[3]; <span class="comment">// pixel spacing (x,y) (in mm)</span>
<a name="l00123"></a><a class="code" href="structitk_1_1par__parameter.html#6f4109a69e24a63365cbc88bddfba800">00123</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#6f4109a69e24a63365cbc88bddfba800">slicessorted</a>; <span class="comment">// 1-slices sorted, 0-slices not sorted</span>
<a name="l00124"></a><a class="code" href="structitk_1_1par__parameter.html#8ae00094ec52a9f89bc943ad2367c4c0">00124</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#8ae00094ec52a9f89bc943ad2367c4c0">image_blocks</a>; <span class="comment">// The total number of image blocks stored in the REC file</span>
<a name="l00125"></a><a class="code" href="structitk_1_1par__parameter.html#3a431b0476e1980f2c3dcf0ada6cc6dc">00125</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#3a431b0476e1980f2c3dcf0ada6cc6dc">num_image_types</a>; <span class="comment">// The number of image types in the REC file</span>
<a name="l00126"></a><a class="code" href="structitk_1_1par__parameter.html#6db4e2597c7786e63b28d143f4aeea42">00126</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#6db4e2597c7786e63b28d143f4aeea42">image_types</a>[<a class="code" href="itkPhilipsPAR_8h.html#8a53fa9729e10eb457a34a657eb5cae1">PAR_DEFAULT_IMAGE_TYPES_SIZE</a>]; <span class="comment">// The different image types </span>
<a name="l00127"></a>00127 <span class="comment">// detected in the REC</span>
<a name="l00128"></a><a class="code" href="structitk_1_1par__parameter.html#07469f30d07a5540f0b9086bd437c65c">00128</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#07469f30d07a5540f0b9086bd437c65c">num_scanning_sequences</a>; <span class="comment">// The number of scanning sequences in the REC file</span>
<a name="l00129"></a><a class="code" href="structitk_1_1par__parameter.html#2313d190633e712a719253ee196862fe">00129</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#2313d190633e712a719253ee196862fe">scanning_sequences</a>[<a class="code" href="itkPhilipsPAR_8h.html#357e4209577cfda328e0fa6ebed6bf2e">PAR_DEFAULT_SCAN_SEQUENCE_SIZE</a>]; <span class="comment">// The different </span>
<a name="l00130"></a>00130 <span class="comment">// scanning sequences </span>
<a name="l00131"></a>00131 <span class="comment">// detected in the REC</span>
<a name="l00132"></a><a class="code" href="structitk_1_1par__parameter.html#d8ef0a91ec21e47c0b143a03f779bf9c">00132</a> <span class="keywordtype">int</span> <a class="code" href="structitk_1_1par__parameter.html#d8ef0a91ec21e47c0b143a03f779bf9c">num_slice_repetitions</a>; <span class="comment">// If num_scanning_sequences > 1 then </span>
<a name="l00133"></a>00133 <span class="comment">// num_image_types may not equal the total number of slice </span>
<a name="l00134"></a>00134 <span class="comment">// repetitions for a single acquisition. This value is the </span>
<a name="l00135"></a>00135 <span class="comment">// total number of slice repetitions for a single acquisition </span>
<a name="l00136"></a>00136 <span class="comment">// and is valid only when slicessorted == 0.</span>
<a name="l00138"></a>00138 <span class="comment"></span>
<a name="l00139"></a>00139 };
<a name="l00140"></a>00140
<a name="l00141"></a>00141 <span class="comment">// Reads the PAR file parameters in "parFile" and stores the PAR parameters in </span>
<a name="l00142"></a>00142 <span class="comment">// pPar.</span>
<a name="l00143"></a>00143 <span class="comment">// Returns false if an error is encountered during reading, otherwise true is </span>
<a name="l00144"></a>00144 <span class="comment">// returned.</span>
<a name="l00145"></a>00145 <a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <span class="keywordtype">bool</span> <a class="code" href="namespaceitk.html#2089dd6ee74514b110f0f43c62c67698">ReadPAR</a>(std::string parFile, <span class="keyword">struct</span> <a class="code" href="structitk_1_1par__parameter.html">par_parameter</a>* pPar);
<a name="l00146"></a>00146
<a name="l00147"></a>00147 <span class="comment">// Returns a vector of paired values, the first contains the slice index and the </span>
<a name="l00148"></a>00148 <span class="comment">// second is the image type for the PAR file "parFile".</span>
<a name="l00149"></a><a class="code" href="namespaceitk.html#6049d5d47f37d129397486c1eb3a3590">00149</a> <span class="keyword">typedef</span> std::pair< int, int > <a class="code" href="namespaceitk.html#6049d5d47f37d129397486c1eb3a3590">PARSliceIndexImageType</a>;
<a name="l00150"></a><a class="code" href="namespaceitk.html#d9a715cb3901e3e0ed5819a9eab7af56">00150</a> <span class="keyword">typedef</span> std::vector< PARSliceIndexImageType > <a class="code" href="namespaceitk.html#d9a715cb3901e3e0ed5819a9eab7af56">PARSliceIndexImageTypeVector</a>;
<a name="l00151"></a>00151 <a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="namespaceitk.html#d9a715cb3901e3e0ed5819a9eab7af56">PARSliceIndexImageTypeVector</a> <a class="code" href="namespaceitk.html#1f7940fdb2b4d25843f74ee9ccc998a6">GetRECSliceIndexImageTypes</a>(
<a name="l00152"></a>00152 std::string parFile);
<a name="l00153"></a>00153
<a name="l00154"></a>00154 <span class="comment">// Returns a vector of paired values, the first contains the slice index and the </span>
<a name="l00155"></a>00155 <span class="comment">// second is the scan sequence for the PAR file "parFile".</span>
<a name="l00156"></a><a class="code" href="namespaceitk.html#9438ecc12e36832446674fd5e0dac2df">00156</a> <span class="keyword">typedef</span> std::pair< int, int > <a class="code" href="namespaceitk.html#9438ecc12e36832446674fd5e0dac2df">PARSliceIndexScanSequence</a>;
<a name="l00157"></a><a class="code" href="namespaceitk.html#253dc77cb1df57c552a5da4b57052ce8">00157</a> <span class="keyword">typedef</span> std::vector< PARSliceIndexScanSequence > <a class="code" href="namespaceitk.html#253dc77cb1df57c552a5da4b57052ce8">PARSliceIndexScanSequenceVector</a>;
<a name="l00158"></a>00158 <a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="namespaceitk.html#253dc77cb1df57c552a5da4b57052ce8">PARSliceIndexScanSequenceVector</a> <a class="code" href="namespaceitk.html#6d026a7906a7291b790bf5694506665a">GetRECSliceIndexScanningSequence</a>(
<a name="l00159"></a>00159 std::string parFile);
<a name="l00160"></a>00160
<a name="l00161"></a>00161 <span class="comment">// Returns a vector of paired values, the first contains the image type and the </span>
<a name="l00162"></a>00162 <span class="comment">// second is the scan sequence for that image type for the PAR file "parFile".</span>
<a name="l00163"></a><a class="code" href="namespaceitk.html#26384b230e12e74d5f08ff70cba58596">00163</a> <span class="keyword">typedef</span> std::pair< int, int > <a class="code" href="namespaceitk.html#26384b230e12e74d5f08ff70cba58596">PARImageTypeScanSequence</a>;
<a name="l00164"></a><a class="code" href="namespaceitk.html#a91b075aa8fd7fa3567a93eac73acd63">00164</a> <span class="keyword">typedef</span> std::vector< PARImageTypeScanSequence > <a class="code" href="namespaceitk.html#a91b075aa8fd7fa3567a93eac73acd63">PARImageTypeScanSequenceVector</a>;
<a name="l00165"></a>00165 <a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="namespaceitk.html#a91b075aa8fd7fa3567a93eac73acd63">PARImageTypeScanSequenceVector</a> <a class="code" href="namespaceitk.html#94186e6707a493e88ae25def9292a45b">GetImageTypesScanningSequence</a>(
<a name="l00166"></a>00166 std::string parFile);
<a name="l00167"></a>00167
<a name="l00168"></a>00168 <span class="comment">// Stores rescale values in the VectorContainer "rescaleValues" for each image </span>
<a name="l00169"></a>00169 <span class="comment">// type of the specified scan sequence number "scan_sequence" (from </span>
<a name="l00170"></a>00170 <span class="comment">// scanning_sequences) for the PAR file "parFile".</span>
<a name="l00171"></a>00171 <span class="comment">// Returns false if an error is encountered during reading, otherwise true is </span>
<a name="l00172"></a>00172 <span class="comment">// returned.</span>
<a name="l00173"></a>00173 <span class="keyword">typedef</span> vnl_vector_fixed< double, PAR_RESCALE_VALUES_SIZE >
<a name="l00174"></a><a class="code" href="namespaceitk.html#0fc4d845fd45c017de82c3447504ab09">00174</a> <a class="code" href="namespaceitk.html#0fc4d845fd45c017de82c3447504ab09">PARRescaleValues</a>;
<a name="l00175"></a>00175 <span class="keyword">typedef</span> <a class="code" href="classitk_1_1VectorContainer.html">VectorContainer< unsigned int, PARRescaleValues ></a>
<a name="l00176"></a><a class="code" href="namespaceitk.html#e2d27382f1fa293721029ceb9b954153">00176</a> <a class="code" href="classitk_1_1VectorContainer.html">PARRescaleValuesContainer</a>;
<a name="l00177"></a>00177 <a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <span class="keywordtype">bool</span> <a class="code" href="namespaceitk.html#1083e9200adc0ff812d47379875d51a5">GetRECRescaleValues</a>(std::string parFile,
<a name="l00178"></a>00178 <a class="code" href="classitk_1_1VectorContainer.html">PARRescaleValuesContainer</a> *rescaleValues, <span class="keywordtype">int</span> scan_sequence);
<a name="l00179"></a>00179
<a name="l00180"></a>00180 <span class="comment">// Stores the diffusion gradient values in the VectorContainer "gradientValues" </span>
<a name="l00181"></a>00181 <span class="comment">// and the diffusion b values in the VectorContainer "bValues" for each gradient </span>
<a name="l00182"></a>00182 <span class="comment">// direction in the PAR file "parFile".</span>
<a name="l00183"></a>00183 <span class="comment">// Returns false if an error is encountered during reading, otherwise true is </span>
<a name="l00184"></a>00184 <span class="comment">// returned.</span>
<a name="l00185"></a>00185 <span class="keyword">typedef</span> vnl_vector_fixed< double, PAR_DIFFUSION_VALUES_SIZE >
<a name="l00186"></a><a class="code" href="namespaceitk.html#bf2ef2fcbe38919fde6173cebd59282b">00186</a> <a class="code" href="namespaceitk.html#bf2ef2fcbe38919fde6173cebd59282b">PARDiffusionValues</a>;
<a name="l00187"></a>00187 <span class="keyword">typedef</span> <a class="code" href="classitk_1_1VectorContainer.html">VectorContainer< unsigned int, PARDiffusionValues ></a>
<a name="l00188"></a><a class="code" href="namespaceitk.html#e91b97ca30c80f4d27e34980458f9ee8">00188</a> <a class="code" href="classitk_1_1VectorContainer.html">PARDiffusionValuesContainer</a>;
<a name="l00189"></a>00189 <span class="keyword">typedef</span> <a class="code" href="classitk_1_1VectorContainer.html">VectorContainer< unsigned int, double ></a>
<a name="l00190"></a><a class="code" href="namespaceitk.html#3d892e6bd1bb4fec5caef2cef5e32c83">00190</a> <a class="code" href="classitk_1_1VectorContainer.html">PARBValuesContainer</a>;
<a name="l00191"></a>00191 <a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <span class="keywordtype">bool</span> <a class="code" href="namespaceitk.html#922c75d270f6e9706a5a2b8cb5de5469">GetDiffusionGradientOrientationAndBValues</a>(std::string parFile,
<a name="l00192"></a>00192 <a class="code" href="classitk_1_1VectorContainer.html">PARDiffusionValuesContainer</a> *gradientValues, <a class="code" href="classitk_1_1VectorContainer.html">PARBValuesContainer</a> *bValues);
<a name="l00193"></a>00193
<a name="l00194"></a>00194 } <span class="comment">// end namespace itk</span>
<a name="l00195"></a>00195
<a name="l00196"></a>00196 <span class="preprocessor">#endif </span><span class="comment">/* __itkPhilipsPAR_h */</span>
<a name="l00197"></a>00197
</pre></div></div>
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