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<h1>itkVoxBoCUBImageIO.h</h1><a href="itkVoxBoCUBImageIO_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="comment">/*=========================================================================</span>
<a name="l00002"></a>00002 <span class="comment"></span>
<a name="l00003"></a>00003 <span class="comment"> Program: Insight Segmentation & Registration Toolkit</span>
<a name="l00004"></a>00004 <span class="comment"> Module: $RCSfile: itkVoxBoCUBImageIO.h,v $</span>
<a name="l00005"></a>00005 <span class="comment"> Language: C++</span>
<a name="l00006"></a>00006 <span class="comment"> Date: $Date: 2008-06-18 19:28:57 $</span>
<a name="l00007"></a>00007 <span class="comment"> Version: $1.0$</span>
<a name="l00008"></a>00008 <span class="comment"></span>
<a name="l00009"></a>00009 <span class="comment"> Copyright (c) Insight Software Consortium. All rights reserved.</span>
<a name="l00010"></a>00010 <span class="comment"> See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.</span>
<a name="l00011"></a>00011 <span class="comment"></span>
<a name="l00012"></a>00012 <span class="comment"> This software is distributed WITHOUT ANY WARRANTY; without even</span>
<a name="l00013"></a>00013 <span class="comment"> the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR</span>
<a name="l00014"></a>00014 <span class="comment"> PURPOSE. See the above copyright notices for more information.</span>
<a name="l00015"></a>00015 <span class="comment"></span>
<a name="l00016"></a>00016 <span class="comment">=========================================================================*/</span>
<a name="l00017"></a>00017 <span class="preprocessor">#ifndef __itkVoxBoCUBImageIO_h</span>
<a name="l00018"></a>00018 <span class="preprocessor"></span><span class="preprocessor">#define __itkVoxBoCUBImageIO_h</span>
<a name="l00019"></a>00019 <span class="preprocessor"></span>
<a name="l00020"></a>00020 <span class="preprocessor">#ifdef _MSC_VER</span>
<a name="l00021"></a>00021 <span class="preprocessor"></span><span class="preprocessor">#pragma warning ( disable : 4786 )</span>
<a name="l00022"></a>00022 <span class="preprocessor"></span><span class="preprocessor">#endif</span>
<a name="l00023"></a>00023 <span class="preprocessor"></span>
<a name="l00024"></a>00024 <span class="preprocessor">#include <fstream></span>
<a name="l00025"></a>00025 <span class="preprocessor">#include <string></span>
<a name="l00026"></a>00026 <span class="preprocessor">#include <map></span>
<a name="l00027"></a>00027 <span class="preprocessor">#include "<a class="code" href="itkImageIOBase_8h.html">itkImageIOBase.h</a>"</span>
<a name="l00028"></a>00028 <span class="preprocessor">#include "<a class="code" href="itkSpatialOrientation_8h.html">itkSpatialOrientation.h</a>"</span>
<a name="l00029"></a>00029 <span class="preprocessor">#include <stdio.h></span>
<a name="l00030"></a>00030
<a name="l00031"></a>00031 <span class="keyword">namespace </span>itk
<a name="l00032"></a>00032 {
<a name="l00033"></a>00033
<a name="l00034"></a>00034 <span class="comment">// Forward declaration</span>
<a name="l00035"></a>00035 <span class="keyword">class </span>GenericCUBFileAdaptor;
<a name="l00036"></a>00036
<a name="l00052"></a><a class="code" href="classitk_1_1VoxBoCUBImageIO.html">00052</a> <span class="keyword">class </span><a class="code" href="itkWin32Header_8h.html#7d4384322557205d75f0719c012dded6">ITK_EXPORT</a> <a class="code" href="classitk_1_1VoxBoCUBImageIO.html" title="Read VoxBoCUBImage file format.">VoxBoCUBImageIO</a> : <span class="keyword">public</span> <a class="code" href="classitk_1_1ImageIOBase.html" title="Abstract superclass defines image IO interface.">ImageIOBase</a>
<a name="l00053"></a>00053 {
<a name="l00054"></a>00054 <span class="keyword">public</span>:
<a name="l00056"></a><a class="code" href="classitk_1_1VoxBoCUBImageIO.html#9713620f17b652714bc845c95f507f7f">00056</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1VoxBoCUBImageIO.html" title="Read VoxBoCUBImage file format.">VoxBoCUBImageIO</a> <a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>;
<a name="l00057"></a><a class="code" href="classitk_1_1VoxBoCUBImageIO.html#1a088e6923e8a934f64a0950a11f822f">00057</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1ImageIOBase.html" title="Abstract superclass defines image IO interface.">ImageIOBase</a> <a class="code" href="classitk_1_1Object.html" title="Base class for most itk classes.">Superclass</a>;
<a name="l00058"></a><a class="code" href="classitk_1_1VoxBoCUBImageIO.html#9881e9cb57fc66343bcfb62833601da7">00058</a> <span class="keyword">typedef</span> <a class="code" href="classitk_1_1SmartPointer.html">SmartPointer<Self></a> <a class="code" href="classitk_1_1SmartPointer.html">Pointer</a>;
<a name="l00059"></a>00059
<a name="l00061"></a>00061 <a class="code" href="itkMacro_8h.html#0fdc15685afa271857c57e7cd482f30c">itkNewMacro</a>(<a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>);
<a name="l00062"></a>00062
<a name="l00064"></a>00064 <a class="code" href="itkMacro_8h.html#574c1f86661d409dd32c742307a0e96a">itkTypeMacro</a>(<a class="code" href="classitk_1_1VoxBoCUBImageIO.html" title="Read VoxBoCUBImage file format.">VoxBoCUBImageIO</a>, <a class="code" href="classitk_1_1Object.html" title="Base class for most itk classes.">Superclass</a>);
<a name="l00065"></a>00065
<a name="l00066"></a>00066 <span class="comment">/*-------- This part of the interfaces deals with reading data. ----- */</span>
<a name="l00067"></a>00067
<a name="l00070"></a>00070 <span class="keyword">virtual</span> <span class="keywordtype">bool</span> CanReadFile(<span class="keyword">const</span> <span class="keywordtype">char</span>*);
<a name="l00071"></a>00071
<a name="l00073"></a>00073 <span class="keyword">virtual</span> <span class="keywordtype">void</span> ReadImageInformation();
<a name="l00074"></a>00074
<a name="l00076"></a>00076 <span class="keyword">virtual</span> <span class="keywordtype">void</span> Read(<span class="keywordtype">void</span>* buffer);
<a name="l00077"></a>00077
<a name="l00078"></a>00078 <span class="comment">/*-------- This part of the interfaces deals with writing data. ----- */</span>
<a name="l00079"></a>00079
<a name="l00082"></a>00082 <span class="keyword">virtual</span> <span class="keywordtype">bool</span> CanWriteFile(<span class="keyword">const</span> <span class="keywordtype">char</span>*);
<a name="l00083"></a>00083
<a name="l00085"></a>00085 <span class="keyword">virtual</span> <span class="keywordtype">void</span> WriteImageInformation();
<a name="l00086"></a>00086
<a name="l00089"></a>00089 <span class="keyword">virtual</span> <span class="keywordtype">void</span> Write(<span class="keyword">const</span> <span class="keywordtype">void</span>* buffer);
<a name="l00090"></a>00090
<a name="l00091"></a>00091
<a name="l00092"></a>00092 <a class="code" href="classitk_1_1VoxBoCUBImageIO.html" title="Read VoxBoCUBImage file format.">VoxBoCUBImageIO</a>();
<a name="l00093"></a>00093 ~<a class="code" href="classitk_1_1VoxBoCUBImageIO.html" title="Read VoxBoCUBImage file format.">VoxBoCUBImageIO</a>();
<a name="l00094"></a>00094 <span class="keywordtype">void</span> <a class="code" href="namespaceHardConnectedComponentImageFilter.html#920ae03048a5ad715d803ca2e92b52de">PrintSelf</a>(std::ostream& os, <a class="code" href="classitk_1_1Indent.html" title="Control indentation during Print() invocation.">Indent</a> indent) <span class="keyword">const</span>;
<a name="l00095"></a>00095
<a name="l00096"></a>00096 <span class="keyword">private</span>:
<a name="l00097"></a>00097 <a class="code" href="classitk_1_1VoxBoCUBImageIO.html" title="Read VoxBoCUBImage file format.">VoxBoCUBImageIO</a>(<span class="keyword">const</span> <a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00098"></a>00098 <span class="keywordtype">void</span> operator=(<span class="keyword">const</span> <a class="code" href="classitk_1_1LightObject.html" title="Light weight base class for most itk classes.">Self</a>&); <span class="comment">//purposely not implemented</span>
<a name="l00099"></a>00099
<a name="l00100"></a>00100 <span class="keywordtype">bool</span> CheckExtension(<span class="keyword">const</span> <span class="keywordtype">char</span>*, <span class="keywordtype">bool</span> &isCompressed);
<a name="l00101"></a>00101 GenericCUBFileAdaptor *CreateReader(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename);
<a name="l00102"></a>00102 GenericCUBFileAdaptor *CreateWriter(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename);
<a name="l00103"></a>00103 GenericCUBFileAdaptor *m_Reader, *m_Writer;
<a name="l00104"></a>00104
<a name="l00105"></a>00105 <span class="comment">// Initialize the orientation map (from strings to ITK)</span>
<a name="l00106"></a>00106 <span class="keywordtype">void</span> InitializeOrientationMap();
<a name="l00107"></a>00107
<a name="l00108"></a>00108 <span class="comment">// Orientation stuff</span>
<a name="l00109"></a>00109 <span class="keyword">typedef</span> <a class="code" href="namespaceitk_1_1SpatialOrientation.html#8240a59ae2e7cae9e3bad5a52ea3496e">SpatialOrientation::ValidCoordinateOrientationFlags</a> <a class="code" href="namespaceitk_1_1SpatialOrientation.html#8240a59ae2e7cae9e3bad5a52ea3496e">OrientationFlags</a>;
<a name="l00110"></a>00110 <span class="keyword">typedef</span> std::map<std::string, OrientationFlags> OrientationMap;
<a name="l00111"></a>00111 <span class="keyword">typedef</span> std::map<OrientationFlags, std::string> InverseOrientationMap;
<a name="l00112"></a>00112
<a name="l00113"></a>00113 OrientationMap m_OrientationMap;
<a name="l00114"></a>00114 InverseOrientationMap m_InverseOrientationMap;
<a name="l00115"></a>00115
<a name="l00116"></a>00116 <span class="comment">// Method to swap bytes in read buffer</span>
<a name="l00117"></a>00117 <span class="keywordtype">void</span> SwapBytesIfNecessary(<span class="keywordtype">void</span> *buffer, <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> numberOfBytes);
<a name="l00118"></a>00118
<a name="l00119"></a>00119 <span class="comment">// Strings used in VoxBo files</span>
<a name="l00120"></a>00120 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_IDENTIFIER_SYSTEM;
<a name="l00121"></a>00121 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_IDENTIFIER_FILETYPE;
<a name="l00122"></a>00122 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_DIMENSIONS;
<a name="l00123"></a>00123 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_SPACING;
<a name="l00124"></a>00124 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_ORIGIN;
<a name="l00125"></a>00125 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_DATATYPE;
<a name="l00126"></a>00126 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_BYTEORDER;
<a name="l00127"></a>00127 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_ORIENTATION;
<a name="l00128"></a>00128 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_BYTEORDER_MSB;
<a name="l00129"></a>00129 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_BYTEORDER_LSB;
<a name="l00130"></a>00130 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_DATATYPE_BYTE;
<a name="l00131"></a>00131 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_DATATYPE_INT;
<a name="l00132"></a>00132 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_DATATYPE_FLOAT;
<a name="l00133"></a>00133 <span class="keyword">static</span> <span class="keyword">const</span> <span class="keywordtype">char</span> * m_VB_DATATYPE_DOUBLE;
<a name="l00134"></a>00134 };
<a name="l00135"></a>00135
<a name="l00136"></a>00136 } <span class="comment">// end namespace itk</span>
<a name="l00137"></a>00137
<a name="l00138"></a>00138 <span class="preprocessor">#endif // __itkVoxBoCUBImageIO_h</span>
<a name="l00139"></a>00139 <span class="preprocessor"></span>
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